RnoINT0010344 @ rn6
Intron Retention
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98538071-98539217:-
Coord C1 exon
chr10:98539114-98539217
Coord A exon
chr10:98538298-98539113
Coord C2 exon
chr10:98538071-98538297
Length
816 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
CCCCTTGCTTTTGTCTTCAGGTC
3' ss Score
12.09
Exon sequences
Seq C1 exon
CTCATTGCTGGGATACATATCCTCACGTTTTCTGTTCACTGACCAGATACTGGAAAAGAGGATTTGTGGCCTTACAAACTGCCATTAACGCGGCCATTATAGAA
Seq A exon
GTAAGTGCTTGACTGGAAAGTTCCGGTGGTTACTATAATTAGCTCCAGAGGGAGGCCATCGACATGTCAATGAAAGATGATGTCCCAGTTTATTTGACCGGCAGTAACGATTCGCCATGGCTGGGCAACCCATAAAGAAGCCACAGCTACTTTTCATAGCTCTCAGATCTGGCGAGTGTGTGGTAAGGCCTCAACAAGCTAGTGCCTCACGCCTGTCACAGCCTAGCGGTCTTTCCATGGCCGAAGGGATGAAAGGGCAAAGAGGAGAAGAACACTGTGTTCTCACTTGGCAGAGGAGTGAAAGGGCAAGTGGCACACTAGGACATACTTGCCAAGCTTTTGATGAGTCACTCATCTCTCCACGAGGGCGGGCGAGGCTCCGTGACTTACTTCCCTAAACATCCTACCTCTAACATCGAACTGGATGAAGCTTCCACATGCATTGTGGTGGGGAGGGGGGGGGGTCAGTGGGCACTCAAATTAGCAGTAATGTAGACTTCAGAGTGTGTGACAGAATTTTTACACCCCCCATTTATAGTTTCCTTTTCTTTTTACTATTTTATTTATTTACATTTCAGTCATTGTCCTCCCCCCTTTTGGGTCCCCCCTCCCACAGTTCCTCTTCTCATTCCTCCTCCCACTTGCCTAGTTCTGCAATGCTTCACGGAAACCTGCAAGCCAGCACACCCAGTTCCCTCTACTGTGTTACGGGACTGCAGCATTCCAACCAGGAAACTGACACAGAGCATCCTCCAGGGCTCATTCCAGCTTCGTCAAACTGTGTACCCTTTAATTTCCCCTTGCTTTTGTCTTCAG
Seq C2 exon
GTCACAACAAAGCACCCTGTGATGGAGGAGTTAATGTCCGTCAACGCGTTCAATATGAAGACCTTACCTTTTATTTCTAAAGACATTTTTCAATATGAAATTTTTATCTTGTTCTGCTTGCTCTATTTCTCCTCGTTCATCTATTTTGCGTCACGCAGCGTTACTAAAGAGAGAAAGCACTCTAAGGAGTTCATGAAAGTAATGGGTCTACAAGACTCTGCATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890:ENSRNOT00000073149:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(8.7=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(19.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACATATCCTCACGTTTTCTGT
R:
GTCTTGTAGACCCATTACTTTCATGA
Band lengths:
310-1126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]