RnoINT0010397 @ rn6
Intron Retention
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98280404-98281320:-
Coord C1 exon
chr10:98281262-98281320
Coord A exon
chr10:98280515-98281261
Coord C2 exon
chr10:98280404-98280514
Length
747 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CTGTCCTTCTGCCCTTCCAGACC
3' ss Score
11.35
Exon sequences
Seq C1 exon
AATCAGAAATATTTCAAAAGAATACAAAGGAAAGCCCAGTAAAATAGAAGCCTTGAAAG
Seq A exon
GTAAATAATAATAATAATAATAATAATCATAATAATAGATAGACTTTTACATTTAAACACAATCTATTTTACTTTTGATGAGCGGCTCTTAGTGATGTTTTAAATTTGAAATGTTATTTAAGTTACATGGTAAACTTTGCCGTTCCATACTTTAGTTCTATTTTTATAAAACTTTTATAAAACTTAGGATGAATGTGTTAAAATACAATGTATTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAAAAAAAAAAAAAATACAATGTATTTAAAACCTATGCAGTGTGATACTGTGTCAATCTAAGTAGAATTTGAGCCTTCCTTCTTCAAGTTGAAAGTCTTCTCTTGTAATTCAAAGTACTATGTGTTTTCCTTTTTTAAAAAATAAATAAATACTTAAAATTTAAAAAGATATTTATCATAAAGGACTTATGGCCATGTAGTATTTTATTATTAATCTATTCTTCCATTCAATGTTAACAAATACTTTTCACACACAGGGCAATGTCAATGAACCTATGGCTGAAACATGCTTCATTCATTCACAATACCAAATTACATTTTCACAAAGAATATTCTATTTATTCAAGGAGATAAAATAATCCAATTGGCTCCATAGAAGAATTGTGTCATTGTAGTTATTTTCTTGTGCCTACCTCCTTTTTTTTTTGTCATCCACCTGTCCTTCTGCCCTTCCAG
Seq C2 exon
ACCTGACACTGGACATATATGAAGGCCAAATCACAGCTTTACTTGGTCACAGTGGAGCTGGGAAGTCAACACTGTTAAATATCCTTAGTGGATTATCTGTCCCTACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040:ENSRNOT00000005489:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(1.4=9.5)
A:
NA
C2:
PF0000522=ABC_tran=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]