RnoINT0010403 @ rn6
Intron Retention
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98273728-98274649:-
Coord C1 exon
chr10:98274510-98274649
Coord A exon
chr10:98273848-98274509
Coord C2 exon
chr10:98273728-98273847
Length
662 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TGGCTGTGTGTGCCCTTTAGAAC
3' ss Score
8.29
Exon sequences
Seq C1 exon
TTTGCAGCTGAAGGAAGTCTGTGTTCCGGAGAACATCACATCACTGGTGAAACAGCACATCCCTGAGGCCAAGCTGTCAGCTGAAAGGGAGAGGACACTTGTCTATACATTACCCTTAGAAACAACCTATAGATTTCCAG
Seq A exon
GTAATGTACATGAGCACAACAAAATAAAATCTGCATGTAATATTTATTAAAGTAGCTATGGTGATCACTGTGTAACTACAATCCATTGAGAGCTTATGATATGTTCGGATGTTAAAATCTGATAGGAAGAGTAAAAAAAATGATATTTTATCCATAGGAGGAAACATGGTATTCTAATTGTTGGGTTGAAACGTTTAAACATGTTAGAAAGTTCCCTTCAGCCCTTCCTCTTTTGTGGCTAGCACAATATTTTAGCACTCACAGCTCAAGAAAAAAATTCAATTCTCCTTTGCTGATTACAATAGAAGTGGTTTCCACTTGTACATGCTCTCTGAAATAGCCACTTAAATTACCTAAACTCAAAAAATCCAAATTATGTAATTAGCCAAATTGTAAAAGCAAAACTAAAATGAAATTCATACTGAAATGCAAATGTATGGAGAGAGTTGACTATAAGAAGGTAATATTTGAGCCTACAGCACAAATGTTAAACAAAATGACACAGAATTTGAAAAATGGAATAATTTCTATAATATTCATTTCTGTGTCTTTGCCATATATGAACTACAATTCCATATACTTTGATTTCTTAGTCCGAGGAGTATGTCCCCAGTTCATGTGATTGTTGCCATGGTGACTCACTGGCTGTGTGTGCCCTTTAG
Seq C2 exon
AACTTTGCCAGAGTCTTGACAGCTGTCCTGGACTGGGAATTGATAGCTATGGTGTTTCCATGACGACTTTGAATGAGGTGTTCCTGAAGCTAGAAGGAAAATCAGCAATTGAAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040:ENSRNOT00000005489:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGAAGGAAGTCTGTGT
R:
TGGTTCTTCAATTGCTGATTTTCCT
Band lengths:
256-918
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]