RnoINT0010432 @ rn6
Intron Retention
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98285425-98286340:-
Coord C1 exon
chr10:98286155-98286340
Coord A exon
chr10:98285573-98286154
Coord C2 exon
chr10:98285425-98285572
Length
582 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCATTTTCAAAAAATTTCAGCTC
3' ss Score
6.32
Exon sequences
Seq C1 exon
ATCTCTTTGGCCTTCCTAATGAGCGTCTTGGTGAGGAAGTCTGTCCTCACTGGCCTGACTGTGTTCCTTCTCACCATCTTCTGGGGAAGCCTCGGTTTCACAGCCCTGTACAGATATCTCCCTGCACCTTTGGAATGGACTCTCAGTCTTTTTAGCCCCTTCGCCTTCACACTAGGAATGGCCCAG
Seq A exon
GTGAGGACCCGTGATGGCTGCACATGCTAAGCTCTAAGATTTAAAATCCCAGCATAAAAACTCCGATTGAACAAAAGTAACCCTTTAAAAGCTTTGAAGGGGTTGGCTGAAGCAAAACTAAACCATTCGGAAAGTGTGGGAGAGGGGAATAAGGAAGCATGGGTGCTGGGGGGGGGGTGGTTCAGTGGGTAAGGGCACTCTTTCAGAGGACCAGAGTTTGGTTCACCACCCCTATGTATATTGGTTCACAACCGCCTGCTGGGATATCAGGCACACATACCACAAACTCAAACTTGGAGGCAAAACACTCATGCACACAAAATAAAAGTAAGTAAATATGTTTTTTAATAAGTTTGAGCGCAAATGCCAACTCTGAACGCCTCCTTGCTTTTTCCTAATGTTTCAACTTCATCTCATGGCACCATTATGGTTGCTCTCCTACATGGTTTGGGAGCTATAAAATATGTCTCTTCTATGTTCACAGAGCAGAGTACCCAATAACTATTTCTTCACCATTAAACCCAGTTTGCATTTAAACTTCTATCAGAAATCTAATTTCCCTTCATTTTCAAAAAATTTCAG
Seq C2 exon
CTCTTACGCGTGGACTATGATTTAAATTCTAACGCACCCCCTGATCCAGCTGGTAGCTCAAATCTGATTGCAGCAACCAATTTCATGCTGGCATTTGATGCGCTTTTGTATCTGGCCCTGACGATGTACTTTGAAAAAGTTCTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040:ENSRNOT00000005489:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.6=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(10.8=84.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGGCCTTCCTAATGAGCG
R:
TTCAAAGTACATCGTCAGGGCC
Band lengths:
318-900
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]