RnoINT0010445 @ rn6
Intron Retention
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98353717-98356574:-
Coord C1 exon
chr10:98356379-98356574
Coord A exon
chr10:98353884-98356378
Coord C2 exon
chr10:98353717-98353883
Length
2495 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
AATTTTTTTTTTATGTATAGGAT
3' ss Score
7.78
Exon sequences
Seq C1 exon
ATATTGGTGAGACAGAAGATGTACAAGCTGGAGGGACAAGAGGCCCAGGGAGACTTGATGGGGAGCAATTTGTCTCTTTACTTAATGAGATGAGTAAGACAAAAGGGGGCATGGCTCTCTGGTGGCAGCAACTCTGTGCAGTGACCAGGCTTCGCTTCTTGAAGTTAAAGTATAGAAGGAAATCCATCGTTATTCT
Seq A exon
GTGAGTACTAAATCAATGTTGTGGCTTCCAATTGTTGCATTAAAGCATACATAAGCAGAACAACAGAAAAGTCATAAACATAAATTCCAGTGAAGGTCCATACCTGTTATTTCTGTTAACAGTCTTGGTAGTCACACATTATGGTATTAATACAAAAAATTTCTCAGAGATAGTATGAGGCCTGGAGTCTTTCTTCACTACCATTACTCCCTTAAAGTCTCCCTGGTAGAAACAATGGGCACTTTAGAACTTAACCTTGTAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTAACTCAGATTTCATAGAATTCTCTGAAAGTGTAATGTATTTGAAAGTTGATACATCTTCAAGTTCTCCCTCTTCTTTGTGGTTCTTATGTGCAAGTGGTCTCATCTCAGTTCCTTCCAAATATCAGGCATCTTTAGGAGTTGAACATAAAAGATACTGACTGACTCTCAAGGAATTTGTCTCTTGACATTAGCACCCTGTGCCCATCTCATAGCCTATCTATAAGTTGTAAATCAGTTCACACATGGAATCCAGAACATGTACGAGAATTCCAGTCAATACTTGCTAGATACATGCTTCAAATGGAGGACCTTAACAAGATTAAAACAAAAAGAAAAATATTTGTAGTTAATTAGAAATGCTTTGTAAAACAGACTTGGAGAGCCACAGAGCCCATCAGGCAAGAAGTCTTGAAGTTCCCCATGTGCTGGGTCCCTTCTCCAGCCTGTTGACAGGATGGCCCACAAGATGAGATAAGTTGTCCGTAAGGGAGAAGTGAGTCAGGTGTGGTGGTCGAAAGAATCTTGCAGATCTGACTGACTAACAATCAGGCCACCTCTTTACTTATACAGGTTTCAGAGAACAAAGTCAGACTAATGATTATCCAAGAAGTACAGATTATATCCTTTTGTCTATGGACATGTGTTTGATTTTTCATTACATGTCTGGGGTTACTAGTTGAGTCACAATTAGAAAGCACCAACAGATTTTATTTTTATTATTAGCCCTAGAACTCCAATTCAAAGACTCTAAAGAATGTCTCTGTCTAAGCAAACACACTTATTATATGACAGTCTGCTTTTAGGCTGGCAGTATTTGCAGTTTTAAAGCTCCCCAGACAAACAGAAAATATGTGAACTGGTCTTTTTATGAATAGCAAACACTAGCCGGTTGTGGTGGCACACGCTGGTAGGATTTGCTGAAGGAGGCAGAGGCAGGAGGATCAAACACTAATACCTAACACCTTTACTATCTTAATTCATTATCTATGCTACAAGTAGGTAAAGTTGATTTTAGTCAATCTTTTCTGTTTAGTGAGGTCTATTCATCCAGGGGTATATCTTGTATGACTCCCCTGTGTTTAAACTATATTTTCAGAGAGCTCTAAGGATATTATAAAATGGGACCTAGAATCTGTCTCTAATTCTCCTAGCCAGTAAGATTTTTTCAATTATCTCTGTTTACCCTTTACCAATTAGTTTGTTTGAGCTTGCTAAGGGGCAGATATCCAAAGGAGATTCGTGAAGTCACCTCACATTTTCCTAGCTTTTGCTTATCCAAGCTTATTTCAATCTCTTGGTCATGAGGAAGACTTACAAACAGTGGCCAGAAAAAGCAGAAGTGAGTTTAGGGCTTTCCCTAAAAGCAGACATAAGTTTAAGACATTCCTTAAAAAGACTCAGAAATAATTTTCTCAAGAAAAGATATAAAACAAGTCATAAGGCCGAACGTCCCCAAGAATGCAACATGCAGAGACCAAACCCCCAAAGTGAGAGACAGAAGGACAGCGATTACAGCATTCGGCTCAGCTTTGCTGGAACTATGTCAAACAGCTGTGCTGGCTTTGTGACTTTTGCAGTTTCCAGTGGATGTGGATTTGCCACCCGTGCTTGGCAGGAGATAAGGGTGAGGTTTCGGCAGTAGCAGTGTAGTGTTGAGATCCAATTTTTGAACTTTTCAAATGGGAATCAAAGGAAAGAAAAACACAAAACTATGTAACAGTTTGAGACTGTGTGGTGTAGGAGTAAGTTTGAGTAGCAGCAGGAGTAAGTTTGAGACAGTGTTGGCTGCCATGAGCAAGGCTAGAGGCAATGGATAGGAGAGCAAAGAGCAACTCGCGAGTCTGGGGAGTAGTATGTTGTGCAACAGAGAGGGAAACATTAGGATAGATGCAGAGAAAATGAGGCTAGATCTCAACTTGCCATGGAAGGAGCCACCTTCTGAAATCGCACAGGCTGTCCCATGGTCAGAGGGCAGCAAGGGAGGTGTGCCAATGATAAATCCTTGCTTCTTACTCCCACGCTAAAGACAAGGAGTAACTTAAGAACCAGAACACAGAACCATATATATGAATGTCTGTCTTCAATAATATCTTGCTTGTACTATATCCATGCCTTTGGAAGAATGTTTTGAAGACTGGGCAATGGCTACAGGTCTATGCTGTTAATTTTTTTTTTATGTATAG
Seq C2 exon
GATTCTGATTTTGGGGATTGGACTTCTGCATATTCTGTCAGCAAATGTTCACAGGTTAGTCAATCAGAGTGATTACTGTTGGGAGCTCTCTCCTCATACGTACTTCCTCACACCTGGCCAACGACCACAGATGCCCCTCACAAACTTACTGATCATCAACAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147:ENSRNOT00000005665:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(0.8=4.5)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]