RnoINT0010477 @ rn6
Intron Retention
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98452841-98453283:-
Coord C1 exon
chr10:98453164-98453283
Coord A exon
chr10:98452980-98453163
Coord C2 exon
chr10:98452841-98452979
Length
184 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
ATGTTTTCCCTTCTGTTTAGGTC
3' ss Score
11.24
Exon sequences
Seq C1 exon
GTACGACAAGTTTTACGGGACTTAGAAATGGAAAATATCCAAGACACTCTTGCTCAGAATTTAAGTGGAGGACAAAAAAGGAAGCTGACTTTTGGGATCGCCATTTTAGGAGACCCCCAG
Seq A exon
GTAAGGGGATAGAAAATCATTCATGAAATCCCATCGGAAGCACAGAAACTATCATACTGGATAAATGTGCCAATGATGGATTTAAGAAAGCTTTAAAGTAAAAGTATTTTACACCTACAGTATTTTGTAAATCATCTTACGCCAGAGGAATAAATGGCCCTGTAATGTTTTCCCTTCTGTTTAG
Seq C2 exon
GTCTTGCTACTGGATGAACCAACCGCTGGGTTGGACCCGCTCTCAAGGCATCACATTTGGAACCTACTGAAAGAGCGGAGATCAGGCAGAGTAATTGTCTTTAGTACTCAGTTCATGGATGAAGCTGATATCCTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326:ENSRNOT00000087502:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(26.5=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(5.4=17.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACAAGTTTTACGGGACTT
R:
GCCAGGATATCAGCTTCATCCA
Band lengths:
255-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]