RnoINT0010500 @ rn6
Intron Retention
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98417638-98417882:-
Coord C1 exon
chr10:98417807-98417882
Coord A exon
chr10:98417733-98417806
Coord C2 exon
chr10:98417638-98417732
Length
74 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
GTTGCCCCATCTCCTTGCAGCTT
3' ss Score
10.17
Exon sequences
Seq C1 exon
GTTGGTGAATGCCCTCAAACTGCAGGACCAGTTGAAAGCTCTTGTCAAGACCCTGTCAGAGGGAGTGAAGAGAAAG
Seq A exon
GTACGTCCAGGACTCTGTATCCCGTTCTGCATCCCACAAGCGGATGACCGACAGGTTGCCCCATCTCCTTGCAG
Seq C2 exon
CTTTGTTTTGTGCTGAGCATCCTGGGGAACCCTTCTGTGGTGCTGCTGGATGAGCCGTCAACTGGGATGGACCCCGAGGGGCAGCAGCAAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326:ENSRNOT00000087502:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.156
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(17.7=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(14.2=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAATGCCCTCAAACTGCA
R:
ACATTTGCTGCTGCCCCTC
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]