RnoINT0012655 @ rn6
Intron Retention
Gene
ENSRNOG00000020433 | Actn4
Description
actinin alpha 4 [Source:RGD Symbol;Acc:61816]
Coordinates
chr1:87080276-87081093:-
Coord C1 exon
chr1:87080947-87081093
Coord A exon
chr1:87080357-87080946
Coord C2 exon
chr1:87080276-87080356
Length
590 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
CTTCGATGGCCTCCCGGCAGGAC
3' ss Score
7.58
Exon sequences
Seq C1 exon
CACCTCCGTGTGGGCTGGGAGCAGCTGCTCACCACCATTGCCCGCACCATCAACGAGGTAGAGAATCAGATCCTCACCCGAGATGCCAAGGGCATCAGCCAGGAGCAAATGCAGGAGTTCCGAGCCTCCTTCAACCACTTTGACAAG
Seq A exon
GTAACCCCACCCCCACCCCACACCGGCAGAGCGTGACCTTTCGTCTCCCCATTGTTATGTCCCTCCTACCCTCTCCATCTGCTCATCCATCCATCCCATTAGCCACTGTCCATAGAATGAGCAGGACCCAGAGTACACACAAGGCCAGGTGGGCAAAGGTCCCAGGACTCTGGTCCCCATGTGCAGGGTTTTAAACATTTGGACCTAGACTGGTAGCCTCTTGAGAAGAATTCTGAGTGTTGAGTTTGATTGTCTCCAGACGACCTTTGACCCAGTACCACGGCCACTGGGCTTCTGTGTGTAGCCTCATAGACTTCCCTGTAAGCACGGAAGGCAGGGAAAGTTCCTCTCTATCTTTGAGCCCCAGACTTGGTCCTGCGCGCTGCCTGCTCAACTCCCACGGAGGCCATGGAGGCCTGTGCCCCACGAATTCCTGGCCACCAGCTTGTCTACATCACCTCTAACTGTGTGTTTCCCTTCCCATGTGTCCTCCTCCCCCGCCCACTGCATGTGGCCTGGCCCCTCTCCCACTTCCGTGGCCTGGTCTCTGCATCACCCCTGTACGCCCGCCTTCGATGGCCTCCCGGCAG
Seq C2 exon
GACCATGGCGGGGCACTGGGGCCTGAGGAATTCAAGGCCTGCCTCATCAGCCTGGGCTACGACGTGGAGAATGACCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020433:ENSRNOT00000027773:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(20.2=42.9),PF134991=EF-hand_7=PU(31.3=53.1)
A:
NA
C2:
PF134051=EF-hand_6=PD(60.0=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCCGTGTGGGCTGG
R:
GTCATTCTCCACGTCGTAGCC
Band lengths:
222-812
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]