RnoINT0017300 @ rn6
Intron Retention
Gene
ENSRNOG00000016696 | Angpt2
Description
angiopoietin 2 [Source:RGD Symbol;Acc:621861]
Coordinates
chr16:76002033-76004351:+
Coord C1 exon
chr16:76002033-76002265
Coord A exon
chr16:76002266-76004220
Coord C2 exon
chr16:76004221-76004351
Length
1955 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
CTGCCGCTTTTTAAACACAGATA
3' ss Score
6.24
Exon sequences
Seq C1 exon
CTTCCTAGAAAAGAAAGTGCTGGACATGGAGGACAAGCACAGTGTGCAGCTGCAGTCCATGAAGGAGCAGAAGGACCAGCTTCAGGTGCTGGTGTCCAAGCAGAGCTCCGTCATCGATGAGCTGGAGAAGAAGCTGGTGACGGCCACAGTCAACAACTCAGTCCTTCAGAAGCAGCAGCATGATCTAATGGAGACGGTCAACAGCTTGCTGACCATGATGTCATCGCCCGACT
Seq A exon
GTGAGTAGTGCTCCTCATTCTGATGACCTTCGGTCAGCGGACCCAACACTCCAACATGGCCTGCCTTAGGTGCTTCACATAGCAGCACAAGAGTCTCAGCCAGCAGAGGCCCAAGCACAAAGTGGGGCAAAGAGAATGGGGGAGGTCACATCCTATACTAATTGCTCACGAAGCACAGACCCCAGTTCTGGTGCGCGGTCATGGGCACATGTATACATGTGTGTCTAGAGGTCTGTCCTCAGGTATCCTCATTTTGGCTTTATACACAAAGCCTCCCTCTGTGACCTAGAGCTCCACAAGGAGCCGCAGGGATGTACCCGTCTCTGCATCCTCAGCGCTGACACCGTGGGGCTGTGCGGCCACATCTGGCTTTGTTTATTTGATGTGAGTTCTAGAGCTCAAACTGCAGAGTAAGCCTTGTACCGACAGCTATCGCTGATTCAAAGCTGCAGAATTCTCATCTTGAGTTAGTTCCCTCATAGGTCAGATGGAGGAGGCTGGCAAGTATTAAGCCACAGTGACTCTTTCTTCCTTTGGCTTTCAAACTGGCACACTGCCCTGGGCCCACAGGAAGGCTAGACACGTAAGGGAGAGGCACAGACATGGTTGGCACCAAGGAGGCACCAGTTCCCATTGCTGACATACCCTGAAAGATGTTTAGCCTTCCTTGTTAGCTTCTTTTAGTTCATAGGGGTGAGGGAGGAAGAAGAGAGTCTTCAGTCATTAATTAAAGATGTAATACTATCTCTGTAGTGTTTATCTGTAGAATTTTTTCCTAACTGACTTTGCCCTCATTCTTACTGTGGTTTATTTCACGATGTCCCCTTATTTGGTGCTTGTGAGGTGTGGGGTGGGGGTGGGGGTGTTGGGTGGCTGTGGCAAGAACTGGAAGTTGAAACAGGAATGGCAGAACTAAAATCTGGAGGGAATGTATCAGCATATAAGGTCTAGATTTAAAGAGTTTAAAACATGTAGACAAGTAGGCATTGTGCTCCCACAAAGGTGCAGACGCTCAGGTCACACTCAACGCCCAGAGGTCACTAAGCATGTCCACTCGGCACTGGATGTGTGTGGTGCCTGTGGAGGCGCATGTGTGCCTGGGCATGCAGCAGAGGCCGGGAGAATATGCGGGTGTCTTCTCTTGAGTCGCTCACTGAAGCAGAGCTGGGCTGACAGCTAACGAGTTATAGTAACCTTGTGTCCCAGCCCCAAGCCCTGGGGTTACTGGTGTGTGCCGCCACATTGGAAAGTTTTATATGGGTGCTAGGATCCAAACTTAGACCTTGAGCTTGCTCAGCAAGTACTCTGACCTAACACCAAGCCCTCTTTCCAGCCTTTCCTTTAATATTCTAAAAAAGATGAAAGATTTAAGCCTCAGACATACTAAGAATGGTCCGTGTGTATGTTCCAACTTCAATGGGAAAACGCCAAAGGGACCTGGGGTGATGGTGGAGGGAGTAAGGTGTCTCCCTTTGTTGTTTTACAATGTTTTCCCAAGTCTAGTCAAGAAGGAATTCTTTTTAAAGGAGTGGTTTATTACAGCTCATTATGAAGTACCCACATTACACACCGTTCGTTTTAAGAGGGAGTAAGAAGCTGGCAGGATGGCTCAGTGGATTAAGGTGCTGGCCACCAAAACCCAATGTTTATATCCCCAGGACCACCATGGTATATGGAGAACTGACTCCCCCTGTGCCATGTCGTGTGCATGTACGTACACACACACACACACACACACACACACACACACACACACACACACAAAGTGTAATTTTAAAAAAGTTAGCAAGAGCCGTTTGTACTAATTTTCCAAGCTGACAGCAAATATGCTGCAGGAGTCAATCAAGGCCATTGCAGTCTGCTTGCTTACACGAGAGCAACTGTCTACGTCTTGAAGAACAGGCGTCTCTCCAGTCAAAAACCCCATTTCAATGCCTGCCGCTTTTTAAACACAG
Seq C2 exon
ATAAGAGCTCTGTTGCTGTCCCTAAAGAAGAGAAAACCACCTTCAGAGACTGTGCAGAAATCTTCAAGTCAGGACTCACCACCAGTGGCATCTACACGCTGACCTTCCCCAACTCCACAGAGGAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016696:ENSRNOT00000022774:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.068
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(14.0=68.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTGGACATGGAGGACAA
R:
TCCTCTGTGGAGTTGGGGAAG
Band lengths:
342-2297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]