MmuINT0015003 @ mm10
Intron Retention
Gene
ENSMUSG00000031465 | Angpt2
Description
angiopoietin 2 [Source:MGI Symbol;Acc:MGI:1202890]
Coordinates
chr8:18703479-18705883:-
Coord C1 exon
chr8:18705651-18705883
Coord A exon
chr8:18703610-18705650
Coord C2 exon
chr8:18703479-18703609
Length
2041 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
CTGCTGCTTTTTAAACACAGCCA
3' ss Score
4.72
Exon sequences
Seq C1 exon
CTTCCTAGAACAGAAAGTTCTGGACATGGAGGGCAAGCACAGCGAGCAGCTACAGTCCATGAAGGAGCAGAAGGACGAGCTCCAGGTGCTGGTGTCCAAGCAGAGCTCTGTCATTGACGAGCTGGAGAAGAAGCTGGTGACAGCCACGGTCAACAACTCGCTCCTTCAGAAGCAGCAGCATGACCTAATGGAGACCGTCAACAGCTTGCTGACCATGATGTCATCACCCAACT
Seq A exon
GTGAGTAGTGCTCCTCCTGCCGATGAACTACGGTCAGGGAAACCTCAACACTCCAACACGGCCTGTCTTGGGTGCTCCGTCTGAAGTACAAGAGTCTCAGCAGAGGCCCAAGCACTGAGGGGTCAAAGAGAAAGGGGCGGGGGAAGGGGGAAGAGGGAAGGCCATGTATTATACTAAATACTTATCACCAAGGACTGACCCAGTTTGGGTGCATGGTCATAGGCACATGTATAAACGTGTGTGTCTAGAGGCCGGTGTCTGTCCTTAGGTGCCATTCATTTTGGCTGTAGAGACAAAGCCTCCTACTGCTGTCCTAGAGCTCCATGAGGAGCCACACGGATCTGCTCATCTCCATATCCTGATCACTGAGAACATAGGGCTGCGTGGCCATATCTGGCTTTGTATTTTTGATGTGAGTTCTAGAACTCAGACTGCAGAGTAAGCCTTGTACCGACAGCTATGTCCCCAACCCCAAAGGACAGTGGTGATTCAAGGCTGCAGAGTTCTCATCTTGAGTTAGTTCCCTCATCACTCAGATGGAAGCCACAAGTTAGGAAGCCATAGTCAATCTTTCTGCCTTTGGCTTTCAAATGGGCACACTGCCCTGGGTCCATGGGAAGGCTTGACACATAAGTGAGAGGCCCCCACTGCCCATGTCTGGGCCATGGTTGGTACCGAGGAGGCACCAGTTCCCATTGCTGGCCATACCCTGAAAGATGTTTAGCCTTCCTCACCACAATTTTGACTTGTTAGCTTCTTTTACTTCCTGGGGGGTGAAGGAGGGAAGATGAGATTTTTCAGTCATTAATTAAAGATGTAATACTAACTTTGTGATGTTTATCTGTAGGATTTTTCCTAACTGGCTTTGACCTCATTCTTACTGTGGTTTATTTCACGATGTCCCCTTATTTGGTGCTTGAGAGGTGTGGGATGGGTGGGTTGGGTGGCGGTGGGAAGAACAGGAAGTTGAAACAGTAACGGCAGAATTAGAATCTGGAGGGAATTTATTGTCTAGACTTAAAGAGTTTAAACATATAGATTAGTAGGTATTGTGCTTCCACAAAGGTACAGACTCTCATGTCACAGCTACTCAACACCAGAGAACACTAAGTCTGTCATTTGGTACTGGATTATGTATAGTCTGGTGCCTGTGGAGATGTATGTGTGCCTGGGCATGCAGGCAGAGGCCAGGAGAAGATGCCTAGTGTCTTCTGAGTCTCTCATTGAACCAGAGCTGGGCTGACAGCTAACAAGCTCTAGTAATCCTGTCTCCTAGCCCCAAGCACTAGGGTTACTGGTGTGTGCTGCCACATTGAAGATTTTTATATGGGTGCTAACCATAAAAACTTTAGACCTCAGGCTTGCTCAGCAAGTACTGTGACCTAACACCGAGCGCACTTTTCAGACCTTCATTTAATACTCTACAAAAGATTAAAGACTTAAGCCTCAGACATACAAGGAATGTCCATGTGTCCATTCCAACTTCGGTGGGAAACCGTCAAAGGGACCTAGGGTGATAGTGGAGGGAATTAGGGGTCTCCCTTTGTTCTTTTACAATGTTTGCCCAAGTCTAGTCAAGAAGGAAATATTTTAAAGGAGTGGTTTATTGCAGCTCATTATGAAGTACTCACGTTACACACGGTTGGTTTTAAAAGGGAGTAAGATGCGGGCAAGATGGCTCAGTGGATAAAGGTGCTGGCAACCAAAAACCAATGTTCAATGTTTAAATCCCTAGGACTAACATGGTGTAAGGAGAACTGACTCCTGCAAATTGTCCCCTAACTGCCACATCTACACCATGGTACACGTGTACACATACACATGTACACACACACACACACACACACACACACACACACACACACACACACACAGAGTTAGCAAGAGCTATTTGTACTAATTTTCCAAACTGACAGCAAACATGCTTCAAGATTATTGAGTCTGTCTTGCTTACATGAGAACAAATGTCTATGTCCTGAATAACAGGTATCTCTCTCTACTCAAAAACCCCATTTCAATGCCTGCTGCTTTTTAAACACAG
Seq C2 exon
CCAAGAGCTCGGTTGCTATCCGTAAAGAAGAGCAAACCACCTTCAGAGACTGTGCGGAAATCTTCAAGTCAGGACTCACCACCAGTGGCATCTACACACTGACCTTCCCCAACTCCACAGAGGAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031465:ENSMUST00000033846:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=NA C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(14.0=68.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types