RnoINT0020257 @ rn6
Intron Retention
Gene
ENSRNOG00000013220 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:RGD Symbol;Acc:1308662]
Coordinates
chr7:12731969-12732370:-
Coord C1 exon
chr7:12732180-12732370
Coord A exon
chr7:12732094-12732179
Coord C2 exon
chr7:12731969-12732093
Length
86 bp
Sequences
Splice sites
5' ss Seq
CTGGTACCT
5' ss Score
4.11
3' ss Seq
TTACTGACGCCTGTGACTAGGTC
3' ss Score
6.11
Exon sequences
Seq C1 exon
GCCACCATCTCCTACTACCAGCTGATGCACATGCAGACAGCGCCGCTGCCTGTGAACTTCCAGATGCTGTGCGAGAGCAGCAAACTATATGACCCGGGCCAACAGTACGCATCTCACGTGCGTCAGCTGCAGCGAGGCGAGGAGCCGGATGTGCGCTACGACTTTGAGCCTTATGTCTCCACCAATGCCTG
Seq A exon
GTACCTTCGCCCTGTGTGGCCACGTGCTTCCAGTGGGAGTGTGGGTGGTAGAACTGAGGGGACCTCTTACTGACGCCTGTGACTAG
Seq C2 exon
GTCCCCAATCATGCGAACACGGAAGGGCAGCTTCAATCCTGGTGACGCTTCAGGACCCGAAGCTGCCGGCAGTCCCCCGGAGGAAGGTGGCACGTCTGAGGGGGCTCCCAACAAGGACCACAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013220:ENSRNOT00000060648:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.453 A=NA C2=0.930
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGTGAACTTCCAGATGC
R:
CCCTTCCGTGTTCGCATGATT
Band lengths:
172-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]