RnoINT0020263 @ rn6
Intron Retention
Gene
ENSRNOG00000013220 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:RGD Symbol;Acc:1308662]
Coordinates
chr7:12729356-12730414:-
Coord C1 exon
chr7:12730277-12730414
Coord A exon
chr7:12729583-12730276
Coord C2 exon
chr7:12729356-12729582
Length
694 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCTGAATGTGTCACCTGCAGCTG
3' ss Score
8.62
Exon sequences
Seq C1 exon
GGGATCTACCGGGTCAACGGCGTGAAAACGCGTGTGGAGAAGCTGTGCCAGGCCTTTGAGAATGGCAAAGAGCTGGTGGAGTTGTCACAGGCCTCACCGCACGACATAAGCAATGTCCTGAAGCTGTACCTACGGCAG
Seq A exon
GTGAGGCCAACCTGGGTGGACCTGGGTCCGTGTGAAGGGCGTGGCCACGGTGGAGCATGGGCGGGGCATTAACATTGAGGGGAGGAGTCAGGCTGGACGGGCCCCTATTGTGAGTTTGCTAGAGATGGGGGGGGGGCAGGTGTGTGCATGGGGACAGGTGGCGCGGCATTGCAGATGGGCAAGAGTCAAGTTCTGTGCTAATAGGTGTGGCAAGAGCTGGGTGGGCGTAGCTATGGAGTCACAGTTTTCAGGAGTCTGGCAGGGTCATGGTGATGTGCTTGAGTCGCTCTGTATTGGTGGAGCGAAAACTAGGTTGGATCAGCCACTGGGCACGGCTAGGACTATGAAGGTCTGAGGCAGGGGTGGGGTGGACCCAGACACTGCAGTGGGTGGGACCCTAGCACGGTGGGCGTGGTCAGAGCTGGGCAGGAGCCAAGAGCAAGTTCTGAGCTGGTGGGCGTGCCTAGAGGTGGGTGGCAGGTACTGGATGGATGGGGAAGGGTAGGTAGTACAGCTGGGTCTTGCTGTGGTGGGCGTGGCTAAAGCTGATGGACCTGCCCCTAGCAGGTCTGAGGCCAGACTGGACTTAGTGTGATGAACTTGACCAGAGTCTGACAGGGGGCGGGGCTTGTCCAGTACTCACTTTTGCTAGGCCAGGCCCTGTGATCTCTCTCTCTGAATGTGTCACCTGCAG
Seq C2 exon
CTGCCGGAGCCCCTCATCTCTTTTCGCTTCTACCATGAGCTGGTGGGATTAGCTAAGGACAGCCTAAAGGCAGAGGCCGAAGCCAAGGCAGCAAGCCGGGGCCGGCAGGACGGGTCCGAGAGTGAGGCTGCGACCTTGGCCATGGTGGGCCGCCTGCGAGAGCTCATGCGGGACCTGCCAGCCGAAAACCGGGCCACACTCTTATACCTGCTGAGGCACCTGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013220:ENSRNOT00000060648:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.184
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(26.0=100)
A:
NA
C2:
PF0062022=RhoGAP=FE(43.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATCTACCGGGTCAACG
R:
AGGTATAAGAGTGTGGCCCGG
Band lengths:
347-1041
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]