RnoINT0021509 @ rn6
Intron Retention
Gene
ENSRNOG00000001888 | Arvcf
Description
ARVCF, delta catenin family member [Source:RGD Symbol;Acc:1306655]
Coordinates
chr11:86744037-86745914:-
Coord C1 exon
chr11:86745388-86745914
Coord A exon
chr11:86744537-86745387
Coord C2 exon
chr11:86744037-86744536
Length
851 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CAGGATCTGTTCATCCACAGGGC
3' ss Score
8.39
Exon sequences
Seq C1 exon
GTCACTAAGACAGTCAAGACTGTGACCACAAGGACAGTCCGCCAGGTGCCTTTGGGTCCAGATGGACTCCCCTTGCTAGATGGCGGCCCTCCTCTTGGCTCTTTTGCTGATGGGCCCCTGGACCGGCACTACGTCCTGCGTGGTGGTGGCCCAGCAGCCACACTCTCCCGAGCCTACCTCAGCAGTGGAGGTGGCTTTCCCGATGGCCCCGAGCCCCGTGATATTCCAAGCTACGGCAGCTTGTCCCGAGGGCTTGGGGTACGGCCACCACGTACTGGCCTCTTGGGCCCGGGACCTGGTGATGGCTGTTTCACACTCCCTGGCCGCCGAGAAGCCTTCCCCATGGGCTCAGAATCTGGACCACCAAGTGGCCGCTCTCTGCCTGAGCATTTCCAAGCAGAGCCATATGGCCTGGAGGATGACACTCGGAGCCTGGCTGCAGATGATGAGGGCGGCCCCGACCTGGAGCCTGACTACAGCACAGCCACACGGAGAAGACCTGAGTACGGGCGGGGCCTCCGTGCCAG
Seq A exon
GTAAGCACCTGTCGCTTGCGACTGCCTCTTCTGGGAATTCTCTCTTCCATTCCGCAGGTACAGAGCCTCCCACAGGTCTCCAGGCTGTGTTTCAGTTTGAATTGCCTCTGGTTCTTCTCAAGGACGGCATCAAGAACGGGCCTGGGAAGATAGGCGTGCACCTGGTGACACAGGTTCTAAGGACTCCAATGGTTCTGCTCTGATAGCCAGCCAGCTGGCCACAAGGACCTGGGCATCAGATGTTTGCACTGTGATTCTGCAGTTTCTGTGCCTCCGTGTCCCCCATGCGCCCTGGTCCTTCTGGTTAAGGCCTTGATCCTGCCCTTTATACTGTTCGTTTATATCTGTAGCATGAAAACATGACCACAGCCCAAGTCTAGAGTTTGTTATATGACTGGGCAAATTATGTTACCTTCCTGGCCTTAGTCCCCCCTTTCCTGGGAAGTGTGAGAGTTCACAAGGTCACTGAGAGCCAAAACGTGTCCTTGTCAGATGGTCTAATTGGAGTGGCCATGCACAGGGAGGATATTCTACCCTTACACTGGTATAGTCAGCTGCTATCACAGAAAGGACGTGGGAGGCCTGCCCTGTCCCTGACAGATGCCACACTGACATTAAGTCACGGTTAATAACACTGTTCAGGAGCGGACTTCCTGACGTGGGCTGTAATCTTGACCTTGCAGCAGCACTGGCTAGTCTGGCCTGCATCTCTTGGTGTCCACCCCGTTTGGGGCTGATGGAGGATGCTGTCAGTCCCCCTTGGCAGGGAATTCCTAGAGCCCTGGACAAGATGTGGAGGGGCAGGGCTGGCAGCTACTGTGGAGGTGTTGGCAGGATCTGTTCATCCACAG
Seq C2 exon
GGCCTTGGAAGACACCGCAGATGACACTGGTGAGCTGGTAGAAGAGCGGCCCCCGTTCCCAGCCGCAACAGCCCCTCTAGCCCAGCCTGAGAGGGGCAGCCTGGGCAGCTTGGACCGAGTAGTGCGGCGCTCACCCTCAGTAGACAGCACCCGCAAGGAGCCGCGCTGGAGGGACCCTGAGCTGCCCGAGGTGCTGGCCATGCTGCGGCACCCCGTGGACCCTGTGAAAGCCAACGCCGCAGCCTACCTGCAGCACCTCTGCTTTGAGAACGAGGGCATCAAGCGTCGGGTGCGGCAGCTGCGTGGGCTGCCCCTACTCGTGGCGTTACTAGATCACCCTCGGGCTGAGGTGCGCCGCCGGGCCTGCGGGGCACTGCGCAACCTCTCCTATGGCCGCGATGCCGACAACAAGGCTGCCATCCGGGACTGCGGGGGCGTGCCAGCCCTGGTGCGCCTGCTGCGGGCTGCCCGTGACAATGAGGTCCGTGAGCTGGTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001888:ENSRNOT00000044635:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.989 A=NA C2=0.405
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0051418=Arm=WD(100=24.4),PF0051418=Arm=PU(81.0=20.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCCCCGTGATATTCCAAG
R:
ACCAGCTCACCAGTGTCATCT
Band lengths:
357-1208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]