RnoINT0042843 @ rn6
Intron Retention
Gene
ENSRNOG00000005359 | Csrnp3
Description
cysteine and serine rich nuclear protein 3 [Source:RGD Symbol;Acc:1306214]
Coordinates
chr3:52116230-52120290:+
Coord C1 exon
chr3:52116230-52116526
Coord A exon
chr3:52116527-52118808
Coord C2 exon
chr3:52118809-52120290
Length
2282 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TCTGTGTTCTTCTTTCCAAGGTG
3' ss Score
10.27
Exon sequences
Seq C1 exon
ATGACCAAGAATGGCACTGTAGAATCGGAGGAAGCGAGCACACTGACCGTGGATGACATTTCCGATGACGATATCGATTTAGACAACACGGAAGTCGACGAATACTTCTTCCTGCAACCCCTGCCCACAAAAAAACGGAGAGCTCTGTTGCGAGCCTCTGGGGTGAAGAAGATCGACGTGGAAGAAAAACACGAGCTGCGGGCCATCCGCCTGTCTCGGGAGGACTGCGGCTGTGACTGCAGAGTGTTCTGTGATCCAGAAACGTGTACCTGCAGCCTGGCAGGCATTAAATGTCAG
Seq A exon
GTAAGGATTGGGAGCTCAGACACCTGAAGAAAAGCTGTCACATGCCACCCCAGAAAGAAGCAGTCATGTTGTGTATAATAATGCATTTTTTTTAACCGAAGAAGAAAAATGCTGACAAGGAAAGGCACATAATTCAAGGGGAAAGAAACCCTAATTCAAGGGCGTTCATAAAATGCTTATGCTGTGCATACTATGAATGCCAATTCAAACCGCAGCTGAGTTTATTGAAGGTGTTTCCTCCCAGATTCGGTCATCACACCAGCCTATTTTAGCCTGCTTACATGTAGTCTGGGAGAGGACACTGTCTGTTCCATTTGAGTTCATATTTTCTGGTTCCTCCATGGGGTGGACGTAACAATTCATCACCAGTGGTATTCTTACTGGAGAAGTTCCTAGCTAGAGAGACCTTTAAAAAAGCAAGTTCTATTCTACCTTGTCCGAAGTAGGCACTGTCAGGTAAACACTTTAGGCTCTGTCATTTCTGCAGTGAGCGGGTTGAGATGCTGTCAAACAGTCAGTGGAATATAAGTAGACAGATTTTTGTAAACAGATTCGGTCATCACACCAGCCTATTTTAGCCTGCTTACATGTAGTCTGGGAGAGGACACTGTCTGTTCCATTTGAGTTCATATTTTCTGGTTCCTCCATGGGGTGGACGTAACAATTCATCACCAGTGGTATTCTTACTGGAGAAGTTCCTAGCTAGAGAGACCTTTAAAAAAGCAAGTTCTATTCTACCTTGTCCGAAGTAGGCACTGTCAGGTAAACACTTTAGGCTCTGTCATTTCTGCAGTGAGCGGGTTGAGATGCTGTCAAACAGTCAGTGGAATATAAGTAGACAGATTTTTGTAAACAAGGTTTTGCCGGGGGGCACAGGCATTTTGTCTATCTGGTTGCCTGTGATGGACTTCACTCTTCCCAGTACTGAGAGGACCCCCCAAATGCTCTCCAATGTTCCCCAGATGTTTTTCAATGAAACATAACACAAAGTTACAATTTACAGCCCTGACTTGGGGCTGCTATAGTTTCCTTAACAAGAAAAGGCATCTGTCTCTGACTACTGCAACACCATTAGCTTGAGGAGGATGAAAAAGAAGCAGGGAGAAAACTTTGACAATTTGAGAGTGGCCTCATAAACAGCAAAAGTCTCTCTCATGGCGGGAAAGCTGAAACTTGAGTTTATTTAAAACACGGCGGGAAGTAGCCTTGCCTGGATGACTAAGCTTTTAAAAAGCTTCAACTTTAAAACTAATTAAAGAGAAAAGCAACAGTTTATCAGTTCCTTGACAAGGTGACTCCCTGGTCCCATCCATCTGAAGTTTAGCAGAGCCCTGCTCTTCCTTTATGCAGAAACGGTTTATATGTATTTAAAGTGAGGTGTTTGCTTAATTCCCTTCAAAGGAGAAAGGCAACTGAGAGCAAAGGGCAGTTCCTTTGGGAGCAACTGAAGAGAATGCATTTACCCTTTCCATCCGCTCTCTCCTTTCTGCTTTTTCTGTTTTGAGTCTGATGCCTCCCTGACATAATAGGCACGTACTCTACCCCCATTGAGCTAACATTTTTTAAAAATGTATCATTTTGAGAAAGGGCTTTTACTAAGTTGCCTGGGCTGGACTTCAGCTTGCAGGTCTCCTGATTCCCTGCAGTTTCATTCTTTGGCACCGGATCGTCCATTTGGAATGGGCTTCTCTTCTTAGGAGGGAAGCAGGGCAAGCAACCTGCACCCACATATCAAGGGCCCACTGAGAAGACAATAGCAATATGGAGCTGGGTGACCCTACGTAGTGTCATCCCAGACTTCCAGAGCAGTGAAGGTCGTCTGATAAAAGGCAAGAACAGAGTAGCATGCGATGATGTCATAGAAGTTGGATTAGACTAAGCTTCCGGGGGAACAGTCTGCATGTGACTTGGAAGTGGGTGGGTGAGTTGGAATGCACCAGAAGGGGACCGGGGTTGCAAGATTGGCAACGAAATCAAATGCAAAAAGGGAAGGGAAGTGGAGAGTGGCGAAATACGAAAGCCCAGCGGAGGGCGCGATCAAATTTAAATTCTCAATTACCCTCAAGCCACTGCTATTTTGAACATACATTTAGAAACCAGTTCATTGCCATAGCTTAAGTCTTCCCTTCCTCGGCTCCTTTTACTTGTGGCTTATACGCCATTTGCTGGGACATGAGTAGAACCTGAATGCATTACTTAATTCAGAGGAGTTGTTACAAAGTCCCTGATTTTATTTGGTCTGTAATGGTGCTTTGCTGCTAATCTGTGTTCTTCTTTCCAAG
Seq C2 exon
GTGGATCGGATGTCTTTCCCATGTGGCTGCACTAAAGAAGGCTGTAGTAACACAGCAGGTAGAATTGAATTTAATCCTATCCGCGTGCGGACTCATTTTTTGCACACAATAATGAAACTTGAACTGGAGAAGAACCGAGAGCAGCAAACCCCCACGCTGAACGGCTGCCACGGGGAGATAAGCACCCACGGCCCTTCCATGGGCCCTGTCGCTCACTCCGTAGAATATTCCATCGCAGACAATTTCGAGATTGAAAGCGAGCCCCAGGCTGCAGTGCTGCACCTGCAGGAGGAGCTGGATTGCCAAGGAGACGAGGAGGAGGAGGAGGAAGACGGAAGCAGTTTCTGCAGTGGAGCCACTGACTCGAGCACCCAAAGCCTGGCCCCCAGTGAATCAGACGAGGAAGAGGAAGAGGAGGAGGAAGAGGAGGAAGAGGAGGAGGAAGATGACGACGACGACAAGGGAGACGGCTTTGTAGAAGGGCTTGGAGCCCATACTGAAGTCGTCCCCCTTCCTTCTGTCCTTTGTTACTCCGATGGTACTGCAGTTCATGAAAGCCACACAAAAAATGCTTCATTTTACGCTAGCTCTTCAACTCTGTACTACCAAATAGACAGTCACATTCCGGGAACTCCTAGCCAGCTTTCTGACAACTATCCTGAAAGAGATACTGTCAAAAACGGTGCCCTTTCGCTGGTGCCTTACGCCATGACCCCAGAGCGCTTTGTTGACTATGCCAGGCAAGCAGAAGAGGCCTATGGAGCCTCTCACTACCCAGCTGCCAACCCGTCGGTCATTGTTTGCTGCCCCACCTCTGAAAACGATAGTGGGGTGCCCTGTAACCCCTTATATCCTGAACACAGGTCCAATCTTCCTCAAGTGGAATTTCACTCATACTTGAAAGGCCCTTCCCAGGAAGGGTTCGTCTCCACATTGAATGGCGACAGCCACATTTCAGAGCATCCTGCAGAAAATCCTTTGAGCCTTGCAGAAAAGAGCAGATTGCATGAGGAGTGCATTCAATCCCCCGTGGTGGAAACAGTCCCCGTTTAGTTGCTTAAATTATTCTATTATAGACCAAGTCTTCTATTTAAGGCACTGTATTGCCTTTGCTGGCGTTGTTTAACCCGAAGACCAAGAATATGTGGACTGTGATTAATCTTTCAGACAGTATTTCCTTCCTTCCTTTCTAGGTTCCCAACTGTGGCGTGGCACAAAATACAGTCGCTATGGGGATTTTAAACGATTTTGAACTGTTTTGATAGAAAATGCTAAATTAAAAAAAAAAAGCATATCTCACAGTTGCCTACCTGTCAAACTGTGTGAAACCTGCCAAGCTATGCAGACCATAGCTCCAAGTTTTAGATTATCGGGCCTGTGCAAGATTGTTAACTAAGACTAGAACGCAAGCAGATTTAGAGTCCTAATTTTTCGATATATCTGAAGATGATGGTGACTTTTTAAATGTAAAAGTAATTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005359:ENSRNOT00000007197:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.551
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]