DreINT0052818 @ danRer10
Intron Retention
Gene
ENSDARG00000075972 | csrnp2
Description
cysteine-serine-rich nuclear protein 2 [Source:ZFIN;Acc:ZDB-GENE-090312-137]
Coordinates
chr23:33706710-33709560:-
Coord C1 exon
chr23:33709264-33709560
Coord A exon
chr23:33707815-33709263
Coord C2 exon
chr23:33706710-33707814
Length
1449 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
TTTGTTACATTGTTCCAAAGGTG
3' ss Score
7.48
Exon sequences
Seq C1 exon
CTGACACGGAACGGAACTGTAGATTGTCCTGAAGCGGAGTTGCTTACCTTGGACGACATATCTGATGAGGATTTGGATGTTGAGAGTGTAGAGGTGGATGACTGCTTCTTCCTGCAGCCCCTTCCAACCAAACGCCGTCGAGCACTACTGAGGGCTTCAGGTATCGCCCGAATAGATGCCAGAGAAAAGGCAGAGCTGCGTGCCATTCGTTTGTCCCGGGAGGAGTGTGGTTGTGACTGCCGATTCTATTGCGACCCACGGCACTGCGGCTGTAGCCAGGCTGGAATTAAGTGCCAG
Seq A exon
GTAGAGTACCCACTTGGTAGTCTTGAAAGTCAGACAACAATAAGTTGTGTAAATTTAAACCTATTTTATATTCCTGTCAAGTGTATGTAGTTTCTGTTCATTGTCGTGTACCCTACGCCATACTCTCAGGCTGTATTCGAAATCGCTCTCTATACCCTAATTCACTCTTCCCTACATTAGTTCACTAATAAAGTCCACTCAAAAGAGTGCACTGGAAAGGATGCAGTTTGTTTGTGCTTTTCTGGTTGATAAAAATAAACCTCTGGGTCAGACCCTGTGATAGTTATTTAACACTTGGCAAGCTGTCTATTAGTAATGAAACTAAGTATTTAGATTTCTGCTATGTATACAGATGCTAATTCAATATTTAAATAATACATGATATAAAACAATCACACCAATAGGATTCCGCTGTGTAATTCATTCGGCACATAAGCCGTCTTAGTGGATAATGAGTGTTCTCTAGCCATTTCGGTTGTACACTCGTTAATGCGATCTATTAGAAATTAGTATTACTGTTTATAGGGTATACTGTAGGGGTGATTTTTTGATACAGCTCAAGAATTGAGTTCTGAGCCTGTCCTTGCATACCTTCCTGTGATCATCAAATAATCTTCAACATCTTGATCAGCTGGCTCAGTTTTGTTTGATTGGGGTTTGAGAGGAAACTTGCAGGATTGTAGTGCTCCAGGAGCTGGGTTAGTGATCACTGCTCAACACAGTGGAATAAAGTAGTTCTATTCCAAAGTACAATTTTGTCAGTGCAATTGCAGGGCTATGCATAAAAAATATTAATGAACCGGAAAGAAAATGGAGGTTTAAATGTTCAACGTGGTTGGCTTAATGCAAAGCCTATTACATAAGCTACGGCATTCAGTCGATACAGGAATTTAAATTTGCTTTTGGCCCAAGGGTGTCCCCTGCTCCTCCTGGGTGCCATTTACAATAGTGCATTTTTTTATTTTAATTAAGCATTTTAGAATGAAAATGCTCCAAGAGGTGGTAGATAAATCCGATAACCCGAAATCCGAAAACCGATAATCCGAATCCGAAACGATACACAATAGTCAGTCTAGTCAGAGGGTAGATAGCTGTGGCTCCATTTTCAAAAATGTGCATTTTATTCTGTCCTTAATAAAACATAACTCCCTCATTTCTTAAAAAAAAAAAAAAAAAGGTTAAAGATGCCAGAGTAGTGTGGACAATAGACATCACACAACTTATGTGTCTTAAAACAAAACGACACCTTGGAGGGCCACCTTCTTGCAGAGTTTTTATTAGAACACCTGCCTGGAAAGGACTTTTATTTTGTAGTTTAGGTGTTCTTAATTGAATCTGGAGCTTAATGTTATTGAAAGGTGGCCTTCAAGATGCATGACTGAAAATCACTGATTTAGCATATTTAAAGAAAAGGCATTAATTTAATATCTTTGTTACATTGTTCCAAAG
Seq C2 exon
GTGGATCGTATGTCCTTCCCATGTGGCTGCACCCGCGATGGTTGTGGTAACTCCGCTGGCCGCATTGAGTTCAACCCTCTCCGTGTGCGAACACACTATCTCCACACTATCATGAAACTTGACCTAGAAAAGAGAACCCTGTTGGGTGTTAGGTCTGGAGAGGACTGCGTGGAAGAGGCAGAGTTAGTCTCCTCACCATCTCTGTCTCTCTCACCGTTGGACTCAGATGTGGAAGTGGAAAGCCAAAGCATTCAGGAACTGCAAGAGGAGCAGTGTGATAGCCTGGAGCGTGAGAACGAGACAGCCGTGCTTCATCTACAGAGTGCAGAGGAGCGGGAAAGGAGACTGGAACAGGAGGAGCAGCAGGTCGAGGAGACCCAGGCCACCGATCCAACCCTTTGCCTCTTACAGGGTGCCTTGACCAGCCAGGCTGAAATGGAGGGCATGGAACGTGTTGAAGGAGTTCTTCTAGAGGGGCCTTTTCCTGAAGGTGCCACCCTGCTCTGTATTACAGAGAACCACGCAGATGAACAGACCCAGCAGAACCTGCTCAAAGACCCTGCTTCTGTCCTCTACTATCAGGTAGGTCACGTAGAGACAGCAGCCTTTGAAACGCTCCCTGCACAAGTAGAGGAGGTGGTGAGCGAAGGTGGGGATCCAGAGATGGAAAGCGATCGGCAAAAACAAGAAACCTGCGGGCAGGATTCGGCCAAGAGCTTGTCTGTCGAAGTACCTCCACTTCTCGAGGATGGGAGCGAAGAGCAACTAAGTCCAGAACAGGCTTCAAATGATGGGGAATGCCTCGAGACGTGCCTGGCACTGGATGAAAAGGCAGTACAACTTCCTCCAGAAGTCTAGAGCCCATCACCTCTGCAGATGTTTTGCACAAGTTAGTCATTCAATTCAAAGAGAGCCTACTTTACACAGTGTGATATGTTACAAGACTGCGTAATGTCATTAAATGTTAAAGAATCAAGTTACCGTCATGGGTTTGTATCCAATTTAGCTGGAGAAAAGCATGTACTGTGTTTGAAGTAGGTTGTCTGTGGTAAAATAAGTTATTAAAAAGAAAAAAAACAGAATAATTTATTTAAAAAAAAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075972:ENSDART00000146180:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.579
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCCGATTCTATTGCGACC
R:
TTCTCACGCTCCAGGCTATCA
Band lengths:
358-1807
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]