HsaINT0042483 @ hg19
Intron Retention
Gene
ENSG00000110925 | CSRNP2
Description
cysteine-serine-rich nuclear protein 2 [Source:HGNC Symbol;Acc:16006]
Coordinates
chr12:51454990-51461752:-
Coord C1 exon
chr12:51461456-51461752
Coord A exon
chr12:51458453-51461455
Coord C2 exon
chr12:51454990-51458452
Length
3003 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
ACCTTCTTGTCCCCGCTCAGGTG
3' ss Score
9.64
Exon sequences
Seq C1 exon
CTGACCAAGAATGGGACAGTGGAGTCGGTGGAGGCTGATGGCCTGACGCTGGATGATGTGTCAGATGAAGATATTGATGTGGAAAATGTGGAGGTGGATGATTACTTCTTCCTGCAGCCTCTGCCCACCAAACGGCGACGGGCCCTGCTGAGGGCTTCTGGGGTCCACCGTATTGATGCTGAAGAGAAGCAAGAACTTCGAGCCATCCGCCTGTCACGGGAAGAATGTGGTTGTGACTGCCGACTGTATTGTGACCCAGAAGCGTGTGCCTGCAGCCAGGCTGGGATTAAATGCCAG
Seq A exon
GTCAGTCCAAGTTGGCCTGAGATAGTATATGTACACCAGGGTCAGCGGGGTGAGGTGTGGGTGCCACTGAACATGGGAGGCCCATTCAGGGGTGGATTCCCTATGGTTGTGAACACTCTCCAGTTCCACAACCCTCCTCCGTCAACAGAGTAAGCAAACAGCACACGGCCAGGCATGGTGGCTCACACCTCTAATCCTAGCTATGTGGGAGGCTGAGGTAGGAGGATCTCTTGAGTCCAGGAGGTCAAGGCTGCAGTGAGCTGAGTTCACACCAGTGCACGCCAGCCTGGGTCACAGAGTGAGACCCTGTCTCTTAAAATTTTTGCAAAGAAAACAAGCATGACAGGATTCTTAGGCTGTGGAGGTATCTCATCTTTTTTTGTTTCATTTCTCAGAGGTGATAAGAAGCAGCTGTTAGGAAAGGGATGAAGAGGAGTTAGTACATTTAACATTTAGTAAATGTTTCCTAAATACTGATTCCTAAACAGTATTTCCTAAATACTGTTTCCTAAATACTGATTCCTTGAGATAAAAGGAAGCAGGACTGGGCATGGTGGCTCACATCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCAGGCAGATTGCTTCCCAGGAGTTCGAGACCAGCCTGGGCAACATGGCTAAGCCCCATCTTTACAAAAAATACAAAAATTAGCTGGACATGGTAGCATGGGCCTGTAGTCCCAGGTACTCAAGAGGCTGAGATGGGAGGAGGATCACTTGAGCCTGGGAGGCATAGGTTGCAGTAAGCTATGATTGTGCCACTGCACTCCAGCCCGGGCGACAGAGCAAGACCCTGTCTCAAAAAGTTAGCAGAGGAATGGTGTGGGCCTGTAGATTCTATCTGCAAACACTTATTGTTCAGTACCTCTACTCCAATTTTGAAAAAATCAAAATAGTATTCAGAGCTTTATAATTCAGGATCAGACCTGGCCTAGCAGAGCTTAAAACCATAGTTATCTGAAAGAGAAAGTATCATCTCTTGTTGGCTGCCCTTTTTTTTTTTTGAGACGGAGTCTCGTTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCTACCTCCACCTCCTGGGTTCAAGTGATTCTCCCGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGTGCACCACTATGCCCGGCTAATTGTTGTATTGTTGTAATTCTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTTGCCAGGCTGGAGTGCCGTAGCGCGTGATCTCGGCTCGCTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTATAGGCACACACCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGACGGCGTTTCACCATGTAGGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCCAGCTTTTGTATTTTTAGTAGAGACAGGGTTTCATCATGTTGGCCGGGCAGGTCTCAAACGCCTGACCTCAGGTGATCTGCCTGCCTCAGCCTCCCGAAGTACTGGGATTACAGGCATGAGCCACCGTGCCTGGCCCCTTGTTGGCCCTCTGATGGGGGACAGTTTAAGACACATTTCAGTTGAAAACAGCAATACCATCCCTAAGAATGAAATTTATCTGGAACTTAATTATTGAGGGTGTAGATGCTGAGTCCTTGTGGTTGGATTTCTCCTAACTCACTCTTTCTTTATTTTTAGCTGGGTAACAAATAACTGTGGTATATCTGGCCAAATACTGCTTTTCAGACCAAAGTCCCATAATGAGTCATTCTGTTACACACACACCTGAGAACAGTCCTAAGAATTGATGCAGCTGGGCCTGGCATGTTGGCTCACACCTGTAACTAGCACTTTGGGAGGCTGGGGTGGAAGGACTGCTTGAGCCCAGGAGTTTGAGGCCAGCCTGGGCAACATAGCGAGACCCCATCTCTACAAAAAATTTTAAAATTAGGGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCATGGCTCCAGGCTGCAGTGAGCCATGATGGCACCACTGCACTCCAGCCTGGACGACAGAGCAAGACCCTATCTCCAAAGGAAAAAAAAATGGTATAACTGGAGTGGAGATTTCTATAAGTCAGTATCATAGAAAGACATTGTGATTTGTACATGCTTATTTGCTTACTTGTGGTTTTAATTTTTCCTTTTATTTTTGGTTTATGTGTTTTTCCTGTTGGAATATGAAAGTGATAAGGAGGTAGAAAGCATCTCCTTTCCAGATATTCCTGGTCTGTAAGTTAATTATCTTGGTAACTGCTTCAGAACTAAACTAGTCAACCCTCAGGGAAAATAAAGCAGGTAGCTAAAAAATTGGCCACTGTGTGAACCTGCGTTCTAGCACCTTAGCAAACTAAGGCACATTTGCTTAGTTTCCCCAGAATGTATTTTTTTTGAAGTAGCAAGATCTTCCACTCACTCTCCCATGCCTGTCATTGCAGGCCATAGGCTTGGTTCCAGCCTTTTGTTGTCTCAGTGAACCAGGTAAGTTCTGAAAAAGTCTCTGAGGCTCGTAAATTTCCTCTGTGAAAACTATCAGCATTCAGAGAAGTATCTCTGGACTCTTAACTGGAAGGACCCTGTGCTGTGATTTTGTCTACTTGTTATTTAGAAGAGGAAACAAAGCCCTAGAGAGATAAATGATTCTCTTGAGGTCACACCACTAATTAATGGCTGAGCTGGGATTGAAATGCAAGTGGTCTGATAACTACCATCTAGTGTTCTGTTAGCTCACACTGCATGCTATGCTTTGAATTGGTTGCTTTTCTTCTTACAAGGAGACCTCAAATCCCAACTGCCTGTTTGCCAGCTCATGTCTCCTGTCTCCATTGTTAGGATTGTAGGTCTCATCTTGCCCCAACCTTCTTGTCCCCGCTCAG
Seq C2 exon
GTGGATCGCATGTCCTTTCCATGTGGCTGCTCCCGGGATGGCTGTGGGAACATGGCAGGACGCATTGAATTTAATCCAATCCGGGTCCGGACTCATTACCTCCACACCATTATGAAGCTGGAGCTGGAGAGCAAGCGGCAGGTGAGCCGCCCAGCAGCCCCAGATGAGGAGCCCTCCCCGACTGCCAGTTGCAGCCTGACAGGAGCACAGGGCTCTGAGACCCAGGACTTCCAGGAGTTCATTGCTGAGAATGAGACAGCAGTGATGCACCTGCAGAGTGCAGAGGAACTGGAGCGGCTCAAGGCAGAAGAAGATTCCAGCGGCTCTAGTGCCAGCCTGGACTCGAGCATCGAGAGCCTGGGTGTGTGCATCCTAGAGGAGCCTCTGGCTGTCCCCGAAGAGCTGTGCCCAGGCCTTACAGCCCCCATTCTCATCCAGGCTCAGCTGCCCCCAGGCTCCTCTGTCCTGTGTTTTACCGAGAACTCAGACCACCCAACTGCCTCAACGGTGAACAGCCCATCCTACTTGAACAGTGGGCCCCTGGTCTATTATCAAGTGGAGCAGAGGCCAGTCTTGGGAGTGAAAGGAGAGCCTGGTACGGAAGAAGGCTCAGCCTCTTTCCCAAAGGAGAAGGATCTGAATGTCTTCTCTCTCCCTGTTACCTCACTCGTGGCTTGTAGCTCCACAGACCCAGCTGCCCTCTGTAAATCAGAGGTGGGGAAAACACCCACCCTAGAAGCTCTATTGCCCGAAGATTGTAACCCTGAGGAGCCTGAAAATGAAGACTTCCACCCTTCCTGGTCCCCCTCAAGCCTCCCCTTCCGCACGGACAATGAAGAGGGCTGTGGGATGGTGAAGACCTCCCAGCAGAATGAGGATCGGCCCCCTGAAGATTCTTCCTTAGAACTCCCTCTGGCAGTGTGACAGGCGCTAGAGGTCCTGCCTCTTACCCATTCTCTATTTATTCCCTTATTTTATCTAACACCATTTCAAAACAAAACTGTAGAAGCAGCTGCTGCTCCCATGTTATTTTATTGGGGTCTTTGGGGAATGGGTGGGAAAGGATTGTTTGAGTATTTTTTAAAAGGGAAACAGTACCAAGGAGACCAGCCCTACCTTGATCTGGGGATAGTCTTGGGGCAAAGAAAGCTGCGTAGTGCTGAACATTAAGCTTTCTGGGCCACTGGAACAAAGAACTAGGATCTCACAGGAAAAGCTGGGTAACTCAAGCAGCTATTCTTTCTGTAGGGACCAGAACACGAGAATTTGAAGAGCATGGCAAAGCCCTTTCTCTCCCAAGCCCCAGGCAGAGTACAAGCTCATTTTTCTCGGTGGTTATTCTGATATCCCATTTTGGTGTGTCATAATACTTCAAACTGGAAAGTCACCTGGTCGAGTCTAGGGAGGAGGGAGTGGAAGGGTCTCTGCTTCTGTACAAAATCTCCAGGATTTACAAAAATGTAACCTGCCTTCCTTCAATCCCATATTTGGTAAATAAGTTAATATTTGACATGTTTGGTGTTCTCTGACCTGTTCCCCACACTGGGGATTCCTGGTCTGTAACTTGAATTGTTTCTTCCACATGTTCTTAAGTACTAGAGTTAAACTTGTCTATGTGTCTTTTTTCTCTCCATCCTTTTTCCTTCGGAGAAAGAGCTGGATTGGCTGGGGATATGGTATAACGAGCCTGAGCCTTCTGTACGTGTCTGACACTAGCACTGTCAGGCAGCTTTCGGCTGGGGCTCACCCATCCCATAGGAGGCCTATGTGGAGCATTAACTGTGGCCAAAGGAGGCAGCGGGAACAGGCTGCTTGCTATCTGGAAAGATGACATATTTGTGCCATGCTTGTTTTTTCACCCAGGTTTTTCCCTCTTTGTGAGATCTGAGCTTTAGTGGAATGTAGAATGTGGCAATCTTAAGGTCACCAATCAGTTTTTGTTCTTTTTTCCTGGATCTACCCTCATGGTCGTTTTCAACATAGCGGGTTAGAGTTCTTATACTGTTCCAGTTCAATTCCAAGAATTGCAAATGTTTATTGGACCCCTCCATCTTGATGATATATAAAAATTGGAAGCCAAACCAGTTCTTAAATGCTACATGCAACTCCCAGATTCCAAAGGATTCAAGTTCTAATTATAACCTTTGAAGCGTATAGAATGGAACTCATTCAGTTTGATTCAGTTCTTACCTCTGTCAGGAGGAATACAGTTCCTGTTCATCCTGTGTTCTAAGATCTCCATTGAACAGCACTGATTTCCTTTCATTAGCAAAGTGATCTTTGTCTCTGTTCTAAAATGGAGGCAGTAGGGAGCAAAACTATTCTTCTCAAGCATCCTTTACACCATACTTTACTTCTGGTATGGTTTATTAACCACACACACACACAAAAGTGAAAAACTGTGTTGGGGGGGAGACACTACTCCTACTTATCTTGCTCATAAAGCCTTTTCTGGTGGGATATTAAGGCCCTGGTGTCTTACAGAAACCATCACGTATGTCGCAGCAGCATTTCACCCCTGAAGTCTCTAAACTCTGAGCCTGAAAAGATTTGTATTTAATACACATAACATTTTTTAGTTCATTCTGCCTTTCCTATTTGTTCCAGTTTTTGCTTGGTTTTAGTTTGGAGGGGAACTTAAGTACACAGATCCTTATCTCTCCCCATCCCCTAGCCTCACAAAACACAGTTGAGAGTCTTTTAAGTACCTGAGCTCTCGAAGCTACCCAGAACTGAACTAGACTCCCCTACCTTAGACTGGTACCCTCAAACACAGGACTGAAGCTTAATTGGGAATTTGGCTTTATGGAGAAAAGAATCTTTTTCAAAGTTTGTGTCGGAAGGGGAGGGTGAGGTTTGCCCACTGTCTCTGCAGGAAGGCTCCGGCTTAATCTAGGAAGTAGATTCCAGCTGCACGATGAGGAACACATTAGCTTTTGGGATCAAACCAGGAATATGAATCTGTAATTATTAAGCTCATTGCCAACCCACAAGATATGTTTCTGAAAACCTGTAGTTTCTTAATTTAAGTCCATCCCCTTCATTAACGCTACAGTTGTGACTCACACTGATCCCAAACTTTTAAGTGCTAAATATTAACATTTAGCATTAACTGTCTTGTCAAGCGAAAGGCCTTCTCTACAACCTAGTCCATCTCACTTCTGGTGCTACCTGAGTTGGACAGAATTCTAGCTCATGGTTGCTAGGAAAGCTAGGCCTCTGATCATAGAAGCAGATAGCTTCAGTCCCAGTCTAGGCCTAGATAAATGACTCTTATTACCACAACCCTTATTATTTTCCAATTTCCTTTCTCACATACTGTACACAGGTAGTATTTTCAATGTGAATCCAAAGCTTGTCTGGTTCTCTGAAAATAATTTTTTCCCCTTTAGGTTCTTTACATTGTGATAATGCTGTATTTAAAGAGAATATTTAAATGTAATATTAAAGAAATATTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110925-CSRNP2:NM_030809:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.493
Domain overlap (PFAM):
C1:
PF098174=DUF2352=PD(65.3=62.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)