RnoINT0042837 @ rn6
Intron Retention
Gene
ENSRNOG00000019653 | Csrnp2
Description
cysteine and serine rich nuclear protein 2 [Source:RGD Symbol;Acc:1308916]
Coordinates
chr7:142116335-142121234:-
Coord C1 exon
chr7:142120938-142121234
Coord A exon
chr7:142119626-142120937
Coord C2 exon
chr7:142116335-142119625
Length
1312 bp
Sequences
Splice sites
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
3' ss Seq
AACCTCCTTTGCTCCCTCAGGTG
3' ss Score
10.21
Exon sequences
Seq C1 exon
CTGACGAAGAACGGGACGGTGGAGTCCGTGGAGGCCGACGGCTTGACCCTCGACGACGTTTCAGACGAAGACATCGATGTGGAGAACGTGGAGGTGGATGACTACTTCTTCCTCCAGCCCCTGCCCACCAAACGACGGCGGGCCCTGCTGAGGGCTTCCGGGGTCCACCGCATCGATGCTGAGGAGAAACAGGAGCTCAGAGCCATCCGCTTGTCTCGGGAAGAGTGTGGCTGTGACTGTCGGCTCTACTGTGACCCAGAAGCCTGTGCCTGTAGCCAGGCTGGGATTAAATGCCAG
Seq A exon
GTCGGTTACACACCCAAACCTGGGATGCGGTTGGGCACAGGGAGGATGAAAGCTTCCTACTAGGTGAGGGACCCGTGGCCGAGATACGCTCTGGTTCCACAGCCCTCCCAGAGAAAACAAGCACAGCAGGCCCTGTGGCTGAGTAGGTGACCGTTGTCTTTTCTGTTGTCCACCTCACGGGACACAAGTGGCAGCCTTTAACTCCTTCCCTTGGCTTTATTTAACACATAGCTGTATAGTCTTCTGACCGGCATTTCTTTCCCAGTCTCAGGTTCAGCCAGTCTTAGGATTGGAGGGACTGGAGAAAGCTTGCTTTGGGGGCGGGGGAACCAGTCTTGTTCCAGCTGGTTGGGAACTGATTTGCTTTATAACCAAGGATGACCTTGAACTCTTGGTCCTGCTTCCACCTCCAAATTCTGGAATTCCCAGGGTTTGTCACCTTGCTTTGGGTCTGGGGAAAGAGCTCAGTAAGGTGATGTTATAGGAAACATGTTCTCACTGTTTGCTGTGTAAGTTTTCTGAGTTTTGTTTTTTTGTATTAAGAAGAGAGAAAGAAGCAGAAAGCATTTCTTTCCCTTTTTTTTTTCTTCATAAAACTGGCCTGGAACTCACTTTATAGCCCAGGCTGGCCTCAAAACTCACATTCACCCGCCTTAGCCTTCTCCCACCCTGTGCTGGGATTAAAGGCACGTGCCAGCACATCATCTTTCTAGAGACCCCTGGCCATAAGTAATTATCTTGGCCACTGCTTTAAAACTACGCTGGTTGACCTTCAGGGGAAAGCAGGTGGTGAGGTGCTGCCCCAGTGTGAATCTCAAGTCAGCATCTCAGCAGAAGGCACCTTTGTTTAGTTTCCCTAGAATACATTGCATCAAAGTAGCAAGATCTCCATGCCTGTCATGCAGAAGGCTTGGCCCAGCCTTTTGTCTCAGTGAACCAGGTAAGTTCTTGAAGTTCCTGAGGCACAGACCTCTTCTGCATTGAGATGCCAGCATTCAGAGGTAGCACTAGCCATGCTAACTGGAAGGAGCCTTTGATGAGATTCTTGTCTTTTTATTTAGAAAAGGAAACAAAGCCCAGGGGAGAAAGTAAATGGCTCTCTTGAGAAGCCACCACTAATTAATGGGTTGAGCTAAGGCTGAAGTTGCAAGGGGTCGGGAAGCTAAGCGTAGGGCTGTGAGCTTGAGCTGTGCGTTACGGTTTGAATCGGTCGCTTCTCAGGTCCCACTGCTGTGTGTGCCAGTGACTGTCACCTGTCTCCCTTGTTAGAGCTGTCGTTCTTATCTGGCCACAACCTCCTTTGCTCCCTCAG
Seq C2 exon
GTGGATCGAATGTCCTTTCCTTGCGGCTGCTCCAGGGATGGCTGTGGGAACATGGCGGGGCGGATTGAGTTTAATCCGATCCGAGTGCGGACTCACTACCTCCACACCATCATGAAGCTGGAGCTGGAGAGCAAAAGGCAGGTGAGTCGCCCGGCGGCCGCTGAGGATGAGCCCCTGCCGGGAGCGCAGAGCTCGGAGACACAGGACTTCCAGGAGTTCATCGCTGAGAACGAGACTGCAGTGATGCATCTGCAGAGTGCAGAGGAACTGGAGCGGCTCAAGGCCGAGGAGGACTCGAGTGGCTCGAGCGCTAGCCTGGACTCCAGCATGGAGAGCCTGGGCGTGTGCATCCTGGAGGAGCCCCTGGCTGTTCCCCAGGAGCTGTGTCCAGGCCTTGCAGCCCCCATTCTCATCCAGGCTCAGCTGCCCCCAGGTTCCTCCGTCCTGTGTTTTACTGAGAACTCAGAACACCCAGCCGCCTCCCCGATGAGCAGCCCATCCTACTTGAACAGTGGACCTCTGGTGTACTACCAGGTAGAGCAGAGGCCGGTCGTGGGAGTGAAAGCAGAGTCTGGTTCAGAAGAAGGCACAGCCTCCTTCCCCAAGGAGAAAGATCTGAGTGTCTTCTCCCTCCCTGTTACCTCACTGGTGGCTTGCAGCCCTTCAGACTCCGCTGCTCTCTGTAAACCAGAAGTGGGGAAAGCACCCAGTCTCAACAAACTCTTGCCTGACGACTGTAACCGTAAGGAGCCTGAACGCGAAGACTTCCACCCGTCTTGGTCTCCCTCAAGCCTACCCTTCCGAACAGACAATGAAGAAGGCTGTGGAGTACAGAACTCCCAGCAGAGTGAGGACCGGACCCCTGAAGACTCAGCCCTAGAACTCCCTCTGGCGGTGTGACTGAGATACATTGTCCATTCTCTATTTATTATCTAATGCCATTTCAAAACAGGACTGCTGCTCCCAGGTTGTTTTGTTGGAAGTCTTAGGAAAGTGGGTAGGAAAGGTTAGTACATGTGTTTTCTGAGAGCGCATACCCAGGAGACCAGCCCCAGCTGCAGGGTCCGTCACCATGCTCTCTGGGCCACCAGAACAAAGGTGTCGATCACGGAGCGAGCTCGGCAGCTCAAGCGGCTCTTTATGCCGAGTGCCAGACCCAAGCATTGAGCAGCTCCCTGCTCCACCCTGGCTCCTCACATCGCGGCGTCTTGTAGCAGCCACACTAGTGGGAAGGCCACTCAGCTGAGCCTACAATGGAGGGGAGATCCCAGAAGAGCCTCTGCTTCTGTACAAAACTCCCAGGGGCTCAGAATGTTTGTTCTGCCTTGTCCCCGCCCCTTTAACTGGTAATAAGTAAATTTCCAACGTGTTTGGTGTTCCCTGACCTGATCTGCAAACTGGGAATCCCTGGTCTGTAACTGAATTCTTTCTTTAGTATGTGCTTCGGTACTCGAGTGAAACTTCTGTCTTGGAAGGTGAAATGCAAGCTGGGTAGGGATGTGGTACAGAGTGAGGCTTGAGCATCAGGCAGGGGTCCAGCATGGAACAATCTGAAGATGGCTTTGTCCAGCTTGCTCTCCCACCTAGTGCGACACACACACGCACGCGCACACACGCACGCGCACACGCACGCGCACACACGCACACGCGCACACGCGCACGCACACACGCACGCACACACGCACGCGCACACGCACGCGCACACACGCACACACGCACACGCACACACGCACGCGCACACACGCACGCGCACACGCACTCTCTGTCCCTTTGGGAGGTCTTGGCTCTGAATGGAATGTAAACTGTAGCACAGCTCATTATGACTGAGGACTCCCTCTGTACCTGCCCTGACGGCCCTTCTTGGTTGTGTGGGGTTAGAAAGCTCTTTGGAGTTTACGGTTCAATCCTAGGAGTGGCAGGTGTTTATCGGAACCTTCCATCTGGGAGACTCATGAAAACTGGAAGTCAGACAGGTTCTTAGTTGTGATGTAGGAGTCCCACATCCAAAGGATTCGGGGTCTCCTTATAATGACAGGCATGGCTGGGACTCCACACTTACCTCAGCAGTAGTGCTGCTCCCCTCGTGACGTTCCGAGGCCCACCCAGCACTGACGTTTTTATTGGCAACATTACCTTCTTACCAGGAAAGAAAAACAAACTCGTTCTGTTTTTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTGGAGGCAGTGTGTTGCTAAATGGCCCTGGGACTTGCTATGTAGACCAGGCTGGCCCCCAACCTGTGGTGGCCCTTCTGATCGTGCATCCTGAGTGTGAGGACTGCAGGTGTGCATCTCCTTGCTCAGTTTTATCTATTTATTTTTGGTGGGATAATAAGGCCCTAGTGTCATAAACAGACTTTAGTGTATGTGGCAGCAGAAACATCTGCAAAGATCCCTAAGCCTGAAGGACCTTGAACTTAAAGTAGACGCTGGTGTTTAGCCCATTCTGCCACTGTCCCTTCCTCGGTTTGCTTGGTTCTTTTGTTGGGGTTCTTAAGTACATTCTCTTTCCAGATATTAGCGATATCTGAAGAGGTCAAGTGTTCTCACTCCTGGCTAGAACTCGCAGTCTCAAAGACTCAAGCTTAGCTGAGACTTGATGGAATCTTCTTGAAAGTTTGTTGGACAGGAGGGGACTCAGCCCCTTCCCTTCTTAAGACTCCATCTCTCTTAGCTTTTAGATTTGGATTTTCATTAAGAAATGTAAAGAGTTAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCACTTGCCTAGCAAGTGCAAGGCCCTGGGTTCGGTCCCCACCTCCGAAAAAAAAGAAATGTAAGGACTAGCCAGCCCCAGACATTTGATATTTCTATATAACTCTGATTTCTTATTCTAAATGCATTTCATTAATTCCTTGTTGATTCAAACTGACCCTGACGTCTGAGTGCTATATTTAGCGTTGACTAATGTCAAGCAAAGGACCTCCTCTACAACTTAGTCCATCTCAGTTCTGGTGCTACCTGAGTTGGACAGAACTTATGGTTCCTGGTTGCCAGGAAGGCTAGGCCTGTGTCACAGAAGCAGAGCCAGTCCCCAGTCTAGCGTAGATGAACTGTGCACGGCTGCAGCTCTTGTATGTTGTCTCCTCGGACTCCGTACACAGGTCGGACTTTCAGTGTGAACCCAGAGCTTGTCTGGTTCTCTGAAAACAATGTTCACTCTTTAGGTTCTTTACATTGTAATAATGCTGTATTTAAAGAGATATTTAAATGTAATATTAAAGAAATATTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019653:ENSRNOT00000026613:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.475
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACTTCTTCCTCCAGCCCC
R:
CTCACCTGCCTTTTGCTCTCC
Band lengths:
343-1655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]