MmuINT0043184 @ mm10
Intron Retention
Gene
ENSMUSG00000044636 | Csrnp2
Description
cysteine-serine-rich nuclear protein 2 [Source:MGI Symbol;Acc:MGI:2386852]
Coordinates
chr15:100479570-100484746:-
Coord C1 exon
chr15:100484450-100484746
Coord A exon
chr15:100482701-100484449
Coord C2 exon
chr15:100479570-100482700
Length
1749 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
ACCCCCTGTGTTCCCCTCAGGTG
3' ss Score
12.31
Exon sequences
Seq C1 exon
CTGACGAAGAACGGGACCGTGGAGTCAGTGGAGGCCGACGGCTTGACACTCGATGATGTCTCGGACGAGGACATCGACGTGGAGAATGTGGAGGTGGACGACTACTTCTTCCTTCAGCCCCTGCCCACCAAACGGCGGCGGGCCCTGCTCAGGGCTTCCGGGGTCCACCGGATTGACGCCGAAGAGAAGCAAGAACTCAGAGCCATCCGCCTGTCTCGGGAAGAGTGTGGTTGTGACTGTCGGCTGTACTGTGACCCAGAGGCATGCGCCTGTAGCCAGGCTGGGATTAAATGCCAG
Seq A exon
GTCAGTCATACACCAAGATCAGGGGTGTGGCTGGGTGCCCGGGAGGATAGAAAGCTTCCCCTCGGGGATGAGGGACCCATGGCTGAGAATATGGTCGGTTCCACAGCTCTCCCAGAGAAGACAAACGGCAGGTCCTTTGGCTGTAGATGTGACTCTTGTCTTTTCTGTTATCTACCTCAGAGAAGACAAGCAGCAGTCGCAGAGGGAAGAGCAGGGCCACTATACTTACATTCGCTAAGTGTCCCGTTAGTAGGGATTCTGTGAGGTAAAAGGATATAGAAATGAGGTGGCCTGTGCACTCAGTCTGCACATGCAGCATCTTTTTCCAATTTTGTAAAAAATCAAAATAGCTTTGAGAATCTCTAACTCAGGCCAGACCTGAGCTGGCACACTCACATCCTTAGTTCCCTCAGTGTGTCTTCTTGTTGGCATTCTAAGAGATGTTTGAAATCCCATTTCCCTGGACAAAGAACTGCGTGGGACTCGATGCTGAGGGGCCTGCGGTGGGGCCTTGGCTCCTCTCCTTGGCTGTTTTAGTAAGAAAGAGCTGGAGTAGATCTGACCAGCATTTCCTTCCCGAAGGCTCCTGCTCAGCCAGTTATTCACAGACCTGGGGAGAGTCTTAGGAATTGGTGGGACTGGGTAAGCTTTCTTTTGGGGCAGGGGAACCAGTCTTATTCCAGGCTGGTTGGGAACTGAATTTGCTTTATAGCCAAGGATGACCTTGAACTCTTGGTCCTGCTTCTACCTCCAAATTCTGGAGTCCTGGTGTGTATCGCCACACCTGGTGTGTATTGCCACGCCTTGGGTCTAGAGGAAGAGCTTAATAAGGCAATATCACAGAAGAATGGTTCTACTGTTGGCTGTGTAATTCTTCTGAGTTTTGTTTTGGGTATTAAGGAAAGAGAAAGAAACAGAGAGCACCTTCCTTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTCTTCCTTCCATTATCCCTTCTTTTTTAGTTCTTCTTTAAAACTGTGTAGCCCAGACTGGCCTGAAACTCACCTTATAGCCCAGGCATTCACCTGCCTAGGCCTTCTCCCGCCCTGGGCTAGCATTAAAGGCATAAAAGGCCACTGCGCCCACATGTCTCCTAAAGATCCCGGCTGTAAGTAATTATTTTGGCCACTGCTTCAAAGCTACGCTGGTTGACCTTCAGGGAGAAGCAGGTGGTGAGATGCTGGCTGCAGTGTGAACCTTCACGTCCACACCTGAGCACTGAGGCACCTTTGTTTAGTCTCCCTAGAGTGTATTGCAATGAAGTAGCAAGATTCCCCCCTCACTTCCCCGTCAGGCAGGAGAGGCAGGAGGCTTGGCCCAGCCTTTTGTCTCAGTGAGCCAGGTAAGTTCCTCAGGCCCAAACCTCTTCTACCCAGAGATGTCAGCATCAGAGGGAGCACCAGACTTGCTAACTGGAAGGAGCCTTTGATGTGATTCTTTTTTATTTAGAAAAGGAAACAAAGCCCAGGGGAGAAAATAAATGGCTCTCTTGAGATGCCACCGCTAATTAACGGCTGAGCTAAAGCTGAGACGCAAGTGGTTGGTTGGATAACTGAGCGAGCGCTGTTAGCTTGAGCTGTGTGTTAGGTTTTGAACTGGTTGTTTCTCAAATCCCAGCTGCTTGTGTGTGCCAGCTAGTGTCACCTGTCTCCACTGTTAGAGCCATTGGTCTTATCTGCCACAACCCCCTGTGTTCCCCTCAG
Seq C2 exon
GTGGATCGAATGTCTTTTCCGTGTGGCTGCTCCAGGGATGGCTGTGGAAACATGGCTGGGCGAATTGAGTTTAACCCGATCCGAGTGCGGACTCACTACCTCCACACCATCATGAAGCTGGAGCTGGAGAGCAAGCGGCAGGTGAGTCGCCCAGCAGCAGAGGAGGAGCCCCTGCCGGGAGCGCAGAGCTCGCAGACACAGGACTTCCAGGAGTTCATCGCCGAGAACGAGACTGCAGTGATGCATCTGCAGAGTGCAGAGGAGCTGGAGCGGCTCAAGGCCGAGGAGGACTCGAGTGGCTCTAGCGCTAGCCTGGACTCCAGCATGGAGAGCCTGGGCGTGTGCATCCTGGAGGAACCCCTGGCTGTTCCCCAAGAGCTGTGCCCAGGCCTCGCGGCCCCCATTCTCATCCAGGCTCAGCTGCCCCCAGGTTCCTCCGTCCTGTGTTTTACTGAGAACTCAGAACACCCAGCTGCCTCCCCGATGAGCAGCCCGTCTTACTTGAACAGTGGACCTCTGGTGTACTACCAGGTAGAGCAGAGGCCAGTGGTGGGAGTGAAAGCAGAGTCCGGGTCAGAGGAAGGCCCAGCCTCCTTCCCCAAAGAGAAAGATCTGAGTGTTTTCTCGCTCCCTGTTACCTCACTGGTGGCTTGCGGCCCTTCAGCCTCAGCTGCTCTCTGTAAGCCAGAGGTGGGGAAAACATCCAGCCTCAACAAACTCCTGCCCGAGGACTGCGGCCTTAAGGAGCCTGAGAGCGAGGACTTGCACCCCTCTTGGTCTCCCTCAAGCCTACCCTTCCGAACGGACAATGAAGAAGGCTGCGGAGTGCAGAACTCCCAGCAGAGTGAGGACCGGACCTCTGAAGACTCAGCCCTAGAACTCCCTCTGGCAGTGTGACCTGAGATACATGTCCATTCTCTATTTATTATCTAACACCATTTCAAAACAAGACTGCTGCTCCCAGGTTATTTTGTTGGAAGTCTTAGGAAAATGGGTAGGAAAGGATTGTTAGTCCATGTGTTTCTGAGAGAGCGTTCCCAGGAGACCAGCCCCAGCTGCAGTGTCCCGTACCGAGCTCTCTGGGCCGCCAGAACAAAGATGTCGATCACAGAGTGAGCTGGGCAGCTCAAGCAGCTCTTTATGCCTAGTGCCAGAACCAAGGATGCGAGCAGCTCCCTGCACCACATGCTGGCTCCTCAAACACCCTGTCTTCTTGTAGCAGCCACTTTAGTGGAAAGGCCACTCAGCTGAGTCTAGAACGGAGAGGAGGCCCCAGAAGAGTGCTTCGATACAAAACTCCCAGGAGCTTTAAACGTTTATTCTGCCCCAACCCCTTGGTGTTTCCTGACCTGATCTGCAAACTGGGGATCCCTGGTCTGTACCTGAATTCTTTCTTTCATATGTGCTTCGGCACGAGAGTGAAACATCTGTCTTGGAAGGTGAAATGCAGGCTGGGTAGGGATGTGACTTGCACATGGGGCAGGGTCCAGTATGGAACAGTCTGGAAGATGGTTTTGTCAAGCTTGCTCTCTCACCTAGTGCAACACACACACACATCCACTCTCTCCTTTTGGTGGGGGGTCTTGGCTCTGAATGGAATGTGCACTGCAGTACAGGTCATCGAGACATAGGACTCTTCCCTCTGTAACTGCCCTCACGGCCATTCTTGGTTGTGTGGGGTTAGAAAGTTCTTTGGAGTTTACAGTTCAATCCCAAGAGTGGCACGTGTGTTTTGGAGCCTTCCATCTTGGAGATTCATGAAAACTGGAAGTCAGACTGCTTCTTAGTTATGACATAGGAGTCCCACATTCCAGAGGATTCCGGATCACATTATAATAATGACGTGGATGCCTGGGACTCAGACTCAACACTTACCTCAGCAGAAGAGCTGCTCCTCTCGTGAGCTCGGGCAGTTCCGAGGTCCCCATTTAGCACGGGCTTCTTGATTGGCAGTGCTACCTCTGCCTCCTGGTTAAATGGCGGCAGTAGGAGCAAAACGCTTTTCTCTTATCATTCTTTACCAAGCATCAAAACCACAAACTTGTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTTTCTTTTTTTTTTTTTAGGCAGTGTGTTGCTAAACAGCCCTGGCTGGCCTGGGACTTGCTATGTAGACCAGGCTGGCCTCCAACCTAGTCATGCATCCTGAGTGTTGTGACTGCAGGTGTACATCTCTTCACTTGGCTTTATCTATTTATTTATTTTTGGTGAGATAATAAGGCCCTGGTGTCATAAACAATCAATGTATGTGGCAGCAGAAACATCTGAAAAAATCCCTGAATCCTAAGCCCGGAGGACCTTGTATTTAACTGGATGCTGGTGTTCTGCCCATTCTGCCACTGTCTCTTCTTGGGTTTCATTGGCTTTTGTTTTTGTTTTTGTTTTTTTGGCTGCACTTCTTAAGTGAGTGCATAGGCTCTCTCTCCAGTCTCACTAGAGTTATCTGAGAAGGTCAAGGTGTTCTCAACCCTGGCTAGACCTCTCAGACTCAAGCTTAGCTGAGATGATGTTGATGCAAAGAAGAATCTTTTTGAAAGTTTGTTGGGACAGGAGGGGACTCGGCCCCCTACCTCCTTAAGACTCCAACTTTCTTAGCCCTTAGATTTGGATTTTCATTAAGAAACGTAAAGACTAGCCAACCCCAAGATATTTCTATATAACTAATTTCTTATTCTAAATGCATTTCATTAATTCCATGTCGATTCAAACTGACCCCAACTTCTGAGTGCTAAACTTAGCGTTGACAATGTCAAGCAAAGAACCTCTTCTACAACTCAGTCCATCTCAGTTCTGGTGCTACCTGAGTCGGACACGATGTATGGTTCCTGGTTGCCGGGACGGCTGGGCCTGTGTCACAGATGCAGAGCCAGTCCCTCAGTCTAGGCCTAGAACTGTGGTGCACTGCTGCAGCTCTTGGACACCGTCTCCTCGGATTCTGCACACAGGTTGGACTCTCAATGTGAACCCAAAGCTTGTCTGGCTCTCTGAAAACAACTTTTGCTCTTTAGGTTCTTTACATTGTAATAATGCTGTATTTAAACAGAATATTTAAATGTAATATTAAAGAAATATTGAAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044636:ENSMUST00000061457:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.477
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGACGCCGAAGAGAAGCA
R:
GTTCTCGGCGATGAACTCCTG
Band lengths:
355-2104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types