MmuINT0043184 @ mm9
Intron Retention
Gene
ENSMUSG00000044636 | Csrnp2
Description
cysteine-serine-rich nuclear protein 2 [Source:MGI Symbol;Acc:MGI:2386852]
Coordinates
chr15:100310001-100315177:-
Coord C1 exon
chr15:100314881-100315177
Coord A exon
chr15:100313132-100314880
Coord C2 exon
chr15:100310001-100313131
Length
1749 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
ACCCCCTGTGTTCCCCTCAGGTG
3' ss Score
12.31
Exon sequences
Seq C1 exon
CTGACGAAGAACGGGACCGTGGAGTCAGTGGAGGCCGACGGCTTGACACTCGATGATGTCTCGGACGAGGACATCGACGTGGAGAATGTGGAGGTGGACGACTACTTCTTCCTTCAGCCCCTGCCCACCAAACGGCGGCGGGCCCTGCTCAGGGCTTCCGGGGTCCACCGGATTGACGCCGAAGAGAAGCAAGAACTCAGAGCCATCCGCCTGTCTCGGGAAGAGTGTGGTTGTGACTGTCGGCTGTACTGTGACCCAGAGGCATGCGCCTGTAGCCAGGCTGGGATTAAATGCCAG
Seq A exon
GTCAGTCATACACCAAGATCAGGGGTGTGGCTGGGTGCCCGGGAGGATAGAAAGCTTCCCCTCGGGGATGAGGGACCCATGGCTGAGAATATGGTCGGTTCCACAGCTCTCCCAGAGAAGACAAACGGCAGGTCCTTTGGCTGTAGATGTGACTCTTGTCTTTTCTGTTATCTACCTCAGAGAAGACAAGCAGCAGTCGCAGAGGGAAGAGCAGGGCCACTATACTTACATTCGCTAAGTGTCCCGTTAGTAGGGATTCTGTGAGGTAAAAGGATATAGAAATGAGGTGGCCTGTGCACTCAGTCTGCACATGCAGCATCTTTTTCCAATTTTGTAAAAAATCAAAATAGCTTTGAGAATCTCTAACTCAGGCCAGACCTGAGCTGGCACACTCACATCCTTAGTTCCCTCAGTGTGTCTTCTTGTTGGCATTCTAAGAGATGTTTGAAATCCCATTTCCCTGGACAAAGAACTGCGTGGGACTCGATGCTGAGGGGCCTGCGGTGGGGCCTTGGCTCCTCTCCTTGGCTGTTTTAGTAAGAAAGAGCTGGAGTAGATCTGACCAGCATTTCCTTCCCGAAGGCTCCTGCTCAGCCAGTTATTCACAGACCTGGGGAGAGTCTTAGGAATTGGTGGGACTGGGTAAGCTTTCTTTTGGGGCAGGGGAACCAGTCTTATTCCAGGCTGGTTGGGAACTGAATTTGCTTTATAGCCAAGGATGACCTTGAACTCTTGGTCCTGCTTCTACCTCCAAATTCTGGAGTCCTGGTGTGTATCGCCACACCTGGTGTGTATTGCCACGCCTTGGGTCTAGAGGAAGAGCTTAATAAGGCAATATCACAGAAGAATGGTTCTACTGTTGGCTGTGTAATTCTTCTGAGTTTTGTTTTGGGTATTAAGGAAAGAGAAAGAAACAGAGAGCACCTTCCTTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTCTTCCTTCCATTATCCCTTCTTTTTTAGTTCTTCTTTAAAACTGTGTAGCCCAGACTGGCCTGAAACTCACCTTATAGCCCAGGCATTCACCTGCCTAGGCCTTCTCCCGCCCTGGGCTAGCATTAAAGGCATAAAAGGCCACTGCGCCCACATGTCTCCTAAAGATCCCGGCTGTAAGTAATTATTTTGGCCACTGCTTCAAAGCTACGCTGGTTGACCTTCAGGGAGAAGCAGGTGGTGAGATGCTGGCTGCAGTGTGAACCTTCACGTCCACACCTGAGCACTGAGGCACCTTTGTTTAGTCTCCCTAGAGTGTATTGCAATGAAGTAGCAAGATTCCCCCCTCACTTCCCCGTCAGGCAGGAGAGGCAGGAGGCTTGGCCCAGCCTTTTGTCTCAGTGAGCCAGGTAAGTTCCTCAGGCCCAAACCTCTTCTACCCAGAGATGTCAGCATCAGAGGGAGCACCAGACTTGCTAACTGGAAGGAGCCTTTGATGTGATTCTTTTTTATTTAGAAAAGGAAACAAAGCCCAGGGGAGAAAATAAATGGCTCTCTTGAGATGCCACCGCTAATTAACGGCTGAGCTAAAGCTGAGACGCAAGTGGTTGGTTGGATAACTGAGCGAGCGCTGTTAGCTTGAGCTGTGTGTTAGGTTTTGAACTGGTTGTTTCTCAAATCCCAGCTGCTTGTGTGTGCCAGCTAGTGTCACCTGTCTCCACTGTTAGAGCCATTGGTCTTATCTGCCACAACCCCCTGTGTTCCCCTCAG
Seq C2 exon
GTGGATCGAATGTCTTTTCCGTGTGGCTGCTCCAGGGATGGCTGTGGAAACATGGCTGGGCGAATTGAGTTTAACCCGATCCGAGTGCGGACTCACTACCTCCACACCATCATGAAGCTGGAGCTGGAGAGCAAGCGGCAGGTGAGTCGCCCAGCAGCAGAGGAGGAGCCCCTGCCGGGAGCGCAGAGCTCGCAGACACAGGACTTCCAGGAGTTCATCGCCGAGAACGAGACTGCAGTGATGCATCTGCAGAGTGCAGAGGAGCTGGAGCGGCTCAAGGCCGAGGAGGACTCGAGTGGCTCTAGCGCTAGCCTGGACTCCAGCATGGAGAGCCTGGGCGTGTGCATCCTGGAGGAACCCCTGGCTGTTCCCCAAGAGCTGTGCCCAGGCCTCGCGGCCCCCATTCTCATCCAGGCTCAGCTGCCCCCAGGTTCCTCCGTCCTGTGTTTTACTGAGAACTCAGAACACCCAGCTGCCTCCCCGATGAGCAGCCCGTCTTACTTGAACAGTGGACCTCTGGTGTACTACCAGGTAGAGCAGAGGCCAGTGGTGGGAGTGAAAGCAGAGTCCGGGTCAGAGGAAGGCCCAGCCTCCTTCCCCAAAGAGAAAGATCTGAGTGTTTTCTCGCTCCCTGTTACCTCACTGGTGGCTTGCGGCCCTTCAGCCTCAGCTGCTCTCTGTAAGCCAGAGGTGGGGAAAACATCCAGCCTCAACAAACTCCTGCCCGAGGACTGCGGCCTTAAGGAGCCTGAGAGCGAGGACTTGCACCCCTCTTGGTCTCCCTCAAGCCTACCCTTCCGAACGGACAATGAAGAAGGCTGCGGAGTGCAGAACTCCCAGCAGAGTGAGGACCGGACCTCTGAAGACTCAGCCCTAGAACTCCCTCTGGCAGTGTGACCTGAGATACATGTCCATTCTCTATTTATTATCTAACACCATTTCAAAACAAGACTGCTGCTCCCAGGTTATTTTGTTGGAAGTCTTAGGAAAATGGGTAGGAAAGGATTGTTAGTCCATGTGTTTCTGAGAGAGCGTTCCCAGGAGACCAGCCCCAGCTGCAGTGTCCCGTACCGAGCTCTCTGGGCCGCCAGAACAAAGATGTCGATCACAGAGTGAGCTGGGCAGCTCAAGCAGCTCTTTATGCCTAGTGCCAGAACCAAGGATGCGAGCAGCTCCCTGCACCACATGCTGGCTCCTCAAACACCCTGTCTTCTTGTAGCAGCCACTTTAGTGGAAAGGCCACTCAGCTGAGTCTAGAACGGAGAGGAGGCCCCAGAAGAGTGCTTCGATACAAAACTCCCAGGAGCTTTAAACGTTTATTCTGCCCCAACCCCTTGGTGTTTCCTGACCTGATCTGCAAACTGGGGATCCCTGGTCTGTACCTGAATTCTTTCTTTCATATGTGCTTCGGCACGAGAGTGAAACATCTGTCTTGGAAGGTGAAATGCAGGCTGGGTAGGGATGTGACTTGCACATGGGGCAGGGTCCAGTATGGAACAGTCTGGAAGATGGTTTTGTCAAGCTTGCTCTCTCACCTAGTGCAACACACACACACATCCACTCTCTCCTTTTGGTGGGGGGTCTTGGCTCTGAATGGAATGTGCACTGCAGTACAGGTCATCGAGACATAGGACTCTTCCCTCTGTAACTGCCCTCACGGCCATTCTTGGTTGTGTGGGGTTAGAAAGTTCTTTGGAGTTTACAGTTCAATCCCAAGAGTGGCACGTGTGTTTTGGAGCCTTCCATCTTGGAGATTCATGAAAACTGGAAGTCAGACTGCTTCTTAGTTATGACATAGGAGTCCCACATTCCAGAGGATTCCGGATCACATTATAATAATGACGTGGATGCCTGGGACTCAGACTCAACACTTACCTCAGCAGAAGAGCTGCTCCTCTCGTGAGCTCGGGCAGTTCCGAGGTCCCCATTTAGCACGGGCTTCTTGATTGGCAGTGCTACCTCTGCCTCCTGGTTAAATGGCGGCAGTAGGAGCAAAACGCTTTTCTCTTATCATTCTTTACCAAGCATCAAAACCACAAACTTGTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTTTCTTTTTTTTTTTTTAGGCAGTGTGTTGCTAAACAGCCCTGGCTGGCCTGGGACTTGCTATGTAGACCAGGCTGGCCTCCAACCTAGTCATGCATCCTGAGTGTTGTGACTGCAGGTGTACATCTCTTCACTTGGCTTTATCTATTTATTTATTTTTGGTGAGATAATAAGGCCCTGGTGTCATAAACAATCAATGTATGTGGCAGCAGAAACATCTGAAAAAATCCCTGAATCCTAAGCCCGGAGGACCTTGTATTTAACTGGATGCTGGTGTTCTGCCCATTCTGCCACTGTCTCTTCTTGGGTTTCATTGGCTTTTGTTTTTGTTTTTGTTTTTTTGGCTGCACTTCTTAAGTGAGTGCATAGGCTCTCTCTCCAGTCTCACTAGAGTTATCTGAGAAGGTCAAGGTGTTCTCAACCCTGGCTAGACCTCTCAGACTCAAGCTTAGCTGAGATGATGTTGATGCAAAGAAGAATCTTTTTGAAAGTTTGTTGGGACAGGAGGGGACTCGGCCCCCTACCTCCTTAAGACTCCAACTTTCTTAGCCCTTAGATTTGGATTTTCATTAAGAAACGTAAAGACTAGCCAACCCCAAGATATTTCTATATAACTAATTTCTTATTCTAAATGCATTTCATTAATTCCATGTCGATTCAAACTGACCCCAACTTCTGAGTGCTAAACTTAGCGTTGACAATGTCAAGCAAAGAACCTCTTCTACAACTCAGTCCATCTCAGTTCTGGTGCTACCTGAGTCGGACACGATGTATGGTTCCTGGTTGCCGGGACGGCTGGGCCTGTGTCACAGATGCAGAGCCAGTCCCTCAGTCTAGGCCTAGAACTGTGGTGCACTGCTGCAGCTCTTGGACACCGTCTCCTCGGATTCTGCACACAGGTTGGACTCTCAATGTGAACCCAAAGCTTGTCTGGCTCTCTGAAAACAACTTTTGCTCTTTAGGTTCTTTACATTGTAATAATGCTGTATTTAAACAGAATATTTAAATGTAATATTAAAGAAATATTGAAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044636-Csrnp2:NM_153407:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.477
Domain overlap (PFAM):
C1:
PF098174=DUF2352=PD(65.3=62.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGACGCCGAAGAGAAGCA
R:
GTTCTCGGCGATGAACTCCTG
Band lengths:
355-2104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: