BtaINT0044805 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010928 | CSRNP2
Description
cysteine-serine-rich nuclear protein 2 [Source:HGNC Symbol;Acc:HGNC:16006]
Coordinates
chr5:28857808-28860739:-
Coord C1 exon
chr5:28860431-28860739
Coord A exon
chr5:28858732-28860430
Coord C2 exon
chr5:28857808-28858731
Length
1699 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CAACCACCTTGTCTTCTCAGGTG
3' ss Score
9.32
Exon sequences
Seq C1 exon
GTCTCTTGGCAGCTGACCAAGAACGGAACGGTGGAATCGGTGGAGGCCGACGGCCTGACGCTGGATGATGTTTCAGATGAAGATATTGATGTGGAAAATGTGGAGGTGGATGATTACTTCTTCCTGCAGCCTCTGCCCACCAAGCGGCGACGTGCCCTGTTACGGGCTTCTGGGGTCCACCGCATCGATGCTGAAGAGAAGCAAGAACTTCGAGCCATCCGCCTGTCACGGGAAGAGTGTGGCTGTGACTGTCGACTGTATTGTGATCCAGAAGCATGTGCCTGCAGCCAGGCTGGGATTAAATGCCAG
Seq A exon
GTCAGTCCTCTCTCACCTGTGGTGGCATAGTGACCATGGTAGCATAGTGACCATAGTGTGGTCACCTGATCACAGGTGACCTGTGACCCCTGGCACCCCAGAGTCAGGGGTGTTGTCTGGTGTGGGTGCCAGTGAATGTGGTGGGTCCCTGTGTAGGGAGTAGCACTCACCATTCTATAGCCCTCCTCTACCGACCAAGAAAACAAGTATGGCAGGATTCTTAGGCTGTGGAGATAGGGATGATTTTTTTTTTCCTGTGTCTCTCACCTCAGAGATGATAAGAAGCAGTTGTCAGCACCTGGAGGAACGGGATTAGTAAGTTTTACATTTAGTAGCTGTCCTTAAATACTGACTTGTTCCTTGTAAACAGAAGCAAAGAACTGAGGTAGGCTTTAGGTTTTATCTTACAAACACTTGCTCATGGTACCACTAGTCCATTTTTGTAAAAATCAGAATAGTCCTCAGAATCTGTAACTCAGGATCAGATTTGGGCTGAAATCCACCGCATCCTTAAAGATAGCATCGTTTCCCAGAGAGCCTCTGACAAGAGACAGTTTGGAAGACAAATCTCAACTGGAAAATGGCAAAGAATATTTATCTGGAACCTGTATACTGAGGCTATCAGTTCTGAGTCCTTGGGGTAGAATGTATCCTAAGCTTTTCTTATTTTCGGGTTGGTATCACATAACTATAACAGGTCTGACCAGATAATGCTTTTCAGACTAAGTGCCATAACGAATTGGTGTGTTACACACAAAGCTGAGGTTAGTTCTAAGAAATGGACTTTTCCCAAAAACTGGAATGGAGAGTTCTGGAAGTTGATATCATAGGAAGACCCTGTGTATTTGTCCATACTTATTGTCTATTCGCATTTTTATTTTTGGTATGGGTGGGGTTTTTTCAACTGGAGAATTCAAAGGGGAGAGGAGGAGGTAGAAAGCATGTCTTTTCCAGATATCCCTGGTGTGTAAGTCTTGATGACTGCTTGCAAACCAAACTGGCCAACCATCAGGGGAAAATGAAGCAAGGAGGGAAAACGGGCCATTATTTTGTTTGAATCATCACTCTAGCATCTTAGCCAACAGAGGCACTTGTGCCTAGTTTCCCAAGAATGTATTGCCTTAGACTGGCTAGGTCTTCTACGTCCTTTTCCATCCCTGTCGTCAAAGAACAGGATTGGGCCCTGGCCTTTTGTTTTCTTAATAAAGTAGGTAAGTTATGGAAGAGTCTCAGGGGTCCCTGCATTTCGTTTTCTTTGAGAATTGTCAGCTTTCAGAGAGTTCTCTCTGGACTTGTAACTGGAAGGGCTCTTTGACATGATCTTGGTTTTTTTTTTGTTCAGAAGAAACAAAGCCCTAGGAGAGAGATGACTTTTCTTGAGGTCACACTTACTAATTAGTGGCTGAGCTGGAATTAAAAGGCAGGTGGTGTGGTAGCTCACAGGGCAGGTTATTTTTTTTTTTTTAAGGCTTTTAAACTTTGTATTTTGTATTGGGGTATAGCCAGTTAGCAATGTTGTGATAGTTTCAGGTTAACAGCTAAGAAACTCAGCCACACATATACATGTATTCATTCTACCCCAAGAGGTTATGTTTTGAATCTGCTGTTTCTCTTCTAAGAAGATCTCAAACTCTGACTCCCTGTGTCTGCCAGCTAACATCTCCTATCTCATCTGGCCTCAACCACCTTGTCTTCTCAG
Seq C2 exon
GTGGATCGCATGTCCTTTCCATGTGGCTGCTCCCGGGATGGCTGTGGCAACATGGCTGGGCGCATTGAATTCAATCCAATCCGGGTCCGGACTCATTACCTCCACACCATCATGAAGCTGGAGCTGGAGAGCAAGCGGCAGGTGAGCCGCCCGCCAGCCCCAGATGAGGAGCCCTCTCCCACAACCAGCTGCAGCCTGGCAGCAGCACAGGGTGCGGAAACACAGGACTTCCAGGAGTTCATTGCCGAGAACGAGACGGCGGTGATGCACCTGCAGAGCGCGGAGGAACTGGAGCGGCTCAAGGCGGAGGAGGACTCCAGTGGCTCCAGTGCCAGCTTGGACTCTGGCATCGAGAGCCTGGGCGTGTGCATCCTGGAGGAGCCCCTGGCTGTCCCGGAAGAGCTGTGCCCGGGCCTCACTGCGCCCATTCTCATCCAGGCTCAGCTGCCCCCGGGCTCCTCTGTGCTGTGTTTTGCTGAGAACTCGGACCACCCGACCGCCTCGGCCGTGAACAACCCATCCTACTTGAACAGTGGGCCCCTGGTCTACTACCAGGTGGAGCAGAGGCCAGTCCTGGGGGTGAAAGGAGAGCCTGGGACAGAAGAAGGCCCACCCTCCTTCCCCAAGGAGAAGGATCTGAATGTCTTCTCTCTCCCTGTTACCTCACTGGTGGCTTGTGGCCCCACAGACCCAGCTGCCCTCTGTAAATCAGAGGTGGGGAAAACATCCACTCTAGAAGCGCTAGTGCCCGAAGATTGTAACCCCGAGGAGCCTGGGAGCGAAGACTGTCGCCCCTCCTGGTCCCCCTCGAGCCTCCCCATGTGCACGGACAGGGAAGAGGGCTGTGCAGTGGAGAAGACCGCGCCGCAGAGTGCGGACAGGCCCCCGGAGGAGCCTGCCCTGGAGCTCCCTCTGGCAGTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010928:ENSBTAT00000014517:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.453
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGAACTTCGAGCCATCC
R:
CCTGGAAGTCCTGTGTTTCCG
Band lengths:
345-2044
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]