RnoINT0044839 @ rn6
Intron Retention
Gene
ENSRNOG00000055226 | Dab2ip
Description
DAB2 interacting protein [Source:RGD Symbol;Acc:621686]
Coordinates
chr3:15039185-15042373:+
Coord C1 exon
chr3:15039185-15039739
Coord A exon
chr3:15039740-15042228
Coord C2 exon
chr3:15042229-15042373
Length
2489 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTCCCTTCCTGCCTCCCTAGGAC
3' ss Score
12.47
Exon sequences
Seq C1 exon
GACAACAGCCGGCGTGTGGAGCACATCCTGAAGCTATGGGTGATTGAGGCCAAGGATCTGCCAGCCAAGAAGAAGTATCTGTGTGAACTGTGCCTGGACGATGTACTGTATGCCCGTACCACGGGCAAGCTCAAGACGGACAATGTCTTCTGGGGAGAGCACTTCGAGTTCCACAACCTGCCGCCCCTGCGCACAGTCACTGTCCACCTGTACCGGGAAACTGACAAGAAGAAGAAAAAGGAACGCAACAGCTACCTGGGCCTGGTGAGCCTGCCTGCCGCCTCGGTGGCTGGGCGGCAGTTTGTGGAGAAGTGGTACCCAGTGGTGACACCTAATCCCAAGGGTGGCAAAGGCCCTGGGCCCATGATCCGAATCAAGGCACGCTACCAGACCATCACCATCTTGCCTATGGAGATGTACAAGGAGTTTGCTGAGCACATCACTAACCACTACCTGGGGCTGTGTGCAGCCCTTGAGCCCATCCTCAGTGCCAAGACCAAGGAGGAGATGGCGTCGGCTCTGGTGCACATCCTGCAGAGCACAGGCAAGGTGAAG
Seq A exon
GTGAGTATGGCGCCCTGTTGCAGAAGACTGGGTTGTCTACTCTTGATGGATCTGTGTTCTACTATAGTCTGCTTCATTTTGGATATAGTATACCCACTTCAGCCACATGGGTCCTTAAAGCTGAGCACTGTGCCATGAGTTGGGGGAACTTTGTACTCGACCAGTGGCAGTGCTGAGCCCTGAAGGCACACTGTGCAGCGAACAGATCAGCACAAGTAGTGCTGAGTGGGCTCCCTGCTGTGCCCAAGCTGGTGTGCCTACGCTCTTCCAGCATGTGAACCGAAACCCACACGCCCAGTGAGATAGCGGTTGGCTGGTATTCCCAATAGGTGAGCTACTCATGGCCTGGCCACAACCCACACCTTCGTGCATAGCTTTTACACACAGGTGCACGTGTATGCACACTTCCTAAGTATAGACAGCCAGACATGGCCCTGGTGCCTTGTAGAAATTGGGATCAGAGAGCCATGCAGATGGGCTCTGCTTCAGAGCCAGAGGGGCCCTGCTCCTGCTACTAATACCACCTTCCAAAGCCTGACGATCTCGAGCATGGTTCAGAAAGGGCACACCTTGGCTCCACCTAACTGGCTAGAGAACAGAGTGTCTCCAGGAGGCACAGCATCTCCAGTAGTGCATGGTTCTCATGGGCTCTGCTGGTGTGCTAAGATGCTTCCCAGTTACCCCTCATTGTCCCTTGGGGACTGCTGTCCACAAAGAGTCAGGGGACGTTACTTGAGCTGTCCTAGCTTTCTGCATTATAGTAGACTTGCGGTAACGGGCCAGTGATAGAGTTTGAGAACGAAGGCTTGTATGAGGATGGGAGTGGGGGTCACCCTAAGCTAATGTCCTAAGCCCTCAACCTGTTGTAATCAGGGAGGCCCAAGAAGGGAACTGGGTTTGGATGCTTAGTGGGCAGAGCTCAGTGGTCTAAGACTCCACGAACCCTTGATCAACTCTTAACCTCTTCCTAGAGGCGCTGGCAGGGGGAGGCTATGGTTGGAAGCCCCTTGTCCTCTGCATCCTCCATTGCCTGCTGGACTGACTGGCCCTGCAGAAGGACAGGGAGGGAAAAGGACTTCCTTAGGGAGAGTGCTGCCTTCCTCCATGTCATCAGGACCCTCTTCCCCATGTGCCTGCCTTCAGGCTGGCTGGGTAGGTTGCCAGCTAGGCCAACTCTTGAAGTACTGCATGGTTTTTGTTGTTGTAGTCTGGTTTTTACATTTGTTATTATTTATTCTATATGTACAGGTGCTTTGCTTTGCCTGCATGTATGTCTGTGCACCACATACATGACATGCCTACTTCCCACAGAGTTCAGAAGAGAGCTTTGGATCCCAGGGACTAGAGTTAGAGGTGATCGTGAGCCACCATGTGGGTGCTGGGAATCAAAGCTCTGAAAGATCTGAAGAGCAGCCAGTGCCGTTGGTTGCTGAACCAGCTCTCCAGCCCATGCAGCTGGGCTTTGGTTTGCTGGTGGGAGTGGACTAGAGACTCAGGAGTTTGGAGAGTCAGCTAGAAGGTTCACCCTTCCCTGCTGCTGAGTCCCAAGGGCTGCTAGTGGCTCAGGAAGCTGATGATATGTGAAGTAGCCACGAGTCTACAGAGGCTGAGGGGTGGGAAGTAACTCTTGTCTCTGGAACAACCTAGAACTAGCAGAGCATTCTTGAGCCAGACAGAGCACATGTGGAAGACTGCTTGTGCAATGAGGCACTCTACCCTCCCAAAGGTTGTAGCCGCACTCTGAGGGTTTTAGACCTGTGTCCTGTCACCTCCTGCCCTCTCTTCAGGTCCTATTTGTGTAAGCTGTGTGCTTTTCCAGCTCCCATCCTAGGATTCTCCCCATTTTCCATGATCTTGGAGGCAGTGCCTGGCCTCAGGTAGCTGTAGGGCCTTAGGCAGACTGTCTGCTCTATGCCTTGCTTTCCTCCTTCTGCTGCCCATCTCTTGGCATTCATGTCCTTCTCCAGTGCTGAGGCCCAGTGTCTGTCACAGAACTTCAGAAAGATGGTGGCTTTGAATAGAAGTCATAGTGGTGCTTCAGCAGCGATGGGTCCTTACCTCTGCTCATTGTGTTTCCAAAGATGTGATCCAGGGGAGCCAACTATAGCTTCTTCTCCGACCCACCTATCTCTCAGCCCTTCCTTTTGTTGGCCAGTCTGGCCTCCTGGATCAAGGTCTTAATTCTGTATTTCACAGGATCCTCAAAAGTTAGGCACATTGGAATGAGGAGTTTCAAATTCTCAGAAACCTTGGCCTGTGCTGGGCTGCTGTGCCTTTTTTCCTAGCCTACAGGCTTTGGGCTTGAGAGGAAGGGAACTACCCTCCTGTCAGGTACCACAGCCAGAGGGAATGGTGTGACTGAGCTCCTCTCCAGTGTTTTCCCATGGTGGGATGCTGCTCATAATCTGTCCTCTAAGTCAGCCTGGCTGTCCAGCAGCCAAGGACAGTCTCAGCTCAGATTCCACTCTGCTCCCTTCCTGCCTCCCTAG
Seq C2 exon
GACTTTCTAACAGACCTGATGATGTCAGAGGTGGACCGCTGTGGGGACAATGAGCACCTCATCTTCCGGGAGAACACATTGGCCACCAAGGCCATCGAAGAATACCTCAAACTCGTGGGCCAGAAGTACCTGCAGGACGCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055226:ENSRNOT00000080760:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=WD(100=43.8)
A:
NA
C2:
PF0061614=RasGAP=PU(27.3=95.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]