GgaINT0124829 @ galGal4
Intron Retention
Gene
ENSGALG00000001419 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
Coordinates
chr17:8581970-8589923:+
Coord C1 exon
chr17:8581970-8582524
Coord A exon
chr17:8582525-8589778
Coord C2 exon
chr17:8589779-8589923
Length
7254 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CCATGGGCTTTGCTTTCCAGGAT
3' ss Score
8.69
Exon sequences
Seq C1 exon
GACAACAGCAGAAGGGTAGAGAATATGTTGAAGTTATGGATTATCGAAGCCAAGGACCTGCCAGCTAAGAAAAAGTACTTGTGTGAATTATGCCTGGATGATGTTCTTTATGCACGAACTACCTGTAAATTGAAAACTGATAATGTCTTCTGGGGGGAGCACTTTGAATTTAATAACCTCCCATCGCTCAAAAACATTACGGTGCACTTATACAAAGAGACTGACAAGAAGAAAAAGAAGGACAAGACCAATTTCATTGGGCAAGTGAACATCCCCGTCAGCTCTGTCACAGGGCGGCAGTTTGTGGAGAAGTGGTACCCTGTGGTCAGCCCCAACCCCGGGAAGGGCAAATCCCCGGGGCCGATGATCCGCATCAAGTCGCGCTACCAGAGCATGAGCATTCTTCCCATGGAGATGTACAAAGAGTTCGCTGAGTACATCACTAACAACTACATGGTGCTGTGCTCGGTGCTGGAGCCCTCGCTGAGCGTGAAGAACAAAGAGGAGATGGCATCTGCGCTGGTGCACATCCTGCAGAGCACAGGCAAGGCCAAG
Seq A exon
GTAAGAGCCGTTGGCGCCCACTGGCTGCCAGGGGAGAGCGTAGGAGCGGTCTCCTGGGTTAGGCTGTTGGAAGTCACTGCTTCAGTTGGTCTCAGCCATCACTAATACAGTGTAATTTTGCTTTTTCTTGCAAGCAAGTTGGTAGCATGTGCATTGCTAATTGCTTAATTAGTAAGGAGATCAGTAGGACCCCAAGATACCAACCTAAGTCATTTTTCTCTGTTTCCGGAGGCTTAGGAGCCAGGCTCTTATTCTGTGAATAGGCACAAACGTAGCAGAAAGGAGGAAGGCACTTCTCGAGGATAAAGTGTGAGCAGTGTTGGCTTAAGCTACGCTGCCTGCATATGCTGGGTGTTCCTGTGTGATCCCAGAAGGGTTCCCTGCTGCGCAGCACTGCAGCACCAAATGTGAGAGCCTACGAGGGGTGCCATGAGAATTCCAAAGCACAGTGCACCTCCAGGCACACACGTCTCTGCAGTCCTTGGGGTTTGTGCTGTTGCTTTCAGAAGGGATGTGATGGGGCAGCAGTGCAGGAAGGCGTGGGCGATCTGGGGTGCTGCTGGGACAGGATTCACTGGGGAGCTGATGCTGGCCAGCTTGTGAGTGGTGGAAATGCAGTGTGTGACTGTCCTTCATGGCTCAGAATCCCGAGTCTGAGAAAGAAGCAAGTCAGGAAGAAGAGGGACCGGGATTTACTGCTAGTGGTGGTCCTGAGAGCGAGGGCAGAGGAGCAAAGCTGGAAACCCCATTACTAGAGAGCACTGCTGAGCACTGAGTTCCACGGGGCATGGAGTTGCCACGGAGTGTCCTTGCATGTCCGCAAGTGCCACAGCACAGCCGACTCAGAGCACTGGCAGATTTCTTTGTTAGCTCCCTGAGCTCTGCAGCTGGTCTCTGGGAAGAGCAAGATTTCCAGAGCTTTAGCAGAGCTGAGATGCAAGCTGCTCACCTGAGGGGAACTGTGAGGCTCAGTGCTTCCTCTGCAGCCTCTGCTGTTGCCTGGGATCATGGCAGGGTTCGTGGATTAGATTTAATTACCATCTGTTGTACAGAGAAGTGGCTTGGCCTCCTGGATAAGTTCAAGGCAGGAGAAGCTCTCTGAGAGGATTGCGAGGCCGTGGTCCTTCTGCTGCAGAGGGAATGAAAATAGCAGCTCTAAGCCTTCCTGACCCCGGGATGGGGCCACGGGGCACTCAGCGAGGGGTGCAGCCCCGCTCCGCTGGGACAGGAGCAGCTCAGGGCATGTGTGATCCTGCTCTTGTAATGCAAGGAGAGCATCCCAGGCATCCCTCCCTTGCTCCTTGTGACAGGGCTTTGCCGTGTTTTGTGGGCCTGGCCCTGCCTTCTGCCGGCACTGCTTGCTGGGCCGCCCTTCAGTGCAGCTCTGGTGGCACTGATGCCGTAGCTCTGGCTGAGATGAAATCACCAGGAAGGACTCTGAGTGTGGCTGGCGCAGTTCTGGTGCAAAAGGCGTCGTCAGCCCCATCTCGGGCACTGTGAGCTGTGTGCACGCGTATCTGAGAGCTGCTGTCACTGCTGCTGCTTTTCCCTCCTCTCTCCAGTGCAGGAGAGGCTCAGGAGAGAGCAGGGATGTTTCCAGGCTCATGTCTGTGCCACTGCTCAGGATCCCAGAGGCTCTGCACGGGGGACGCAGCAAACAGTAAACAGACGTGATGTATTGCCCCCTAAAATGGAGCTGCTGCTTTCTCTGCCTGTCATCTGCCATCAGCATTAGCGCAGGGTTGAGAGAGCTGTCAAAGCAACAGGAGTTACTGGAGCATGGGAACCGGGTGATGCCTGCTTTGTGGAGGAGTTGGACAAGCAGAGAAAAGGAAAAGCTGGCAACAAGGGGAAAAAAATAGGTGAATGGGAGAGGAGAGCACCCACCCACCCTGTCTGTGTGACACAGCATGGAGCCCCGTCCAGAGCAGGTGGGCTGTGCTGATATCGTGGTGCTCCTGTCCCTGAGCAGGCTTCAGCCCTGCCTGGGTTTGTGCTGCGCCTGTGTTGGGCTGCGTGGGGCCACGGGGCAGAGACCTCTCTGAGCTGAAGAGCACAGATGTGGTGATGGGCAGTTACTAATTTAATTCACTGATAAAGGGCTTTCTGTGGTTCTTGGCTGCCGTAGGTAACGCTAAAGCAGCAATTACAGCTGGAGTGAGAAACAAGTGTCCAGCAGATTATCTATGGAGATGTGTTAGCAGCTGGTTGCTGTCGCAGTGCTCTCTCTGTTTCTCCTGTAGCTGTTCACTGGAGGTGCTGTGCAGTCCCTTGCAGAGGCACAGTGGTCCCCCAGGGGCTGCCATGCATGGCTGTGCCCGCTGCCCCAGCAGCCCTGCGGGCAGAGCAGCCCCACACAGCCCCCAGCTCCTGTCAGTGCCCGCTGTGCTGCAGCCAGGGGATGTTACTGGGGCTGGTCAGAGCTGCAGGCAGGGTGGGGGTCCTGCACAGTGTGGGCAGCGGGGGGGGCAAGGGTTGCAGCTGCATCTTCTCCCTTAAATAACTGCATCAGCGTGAGCTTCCTTTCTTTATCACAGTAGATTAAAAGATGGGAAATGAAAGCAGAGAGTCCTCCCCGGAGTCAGAGGCCGTGCTTCCTTTGATCTCTGCTTGGGAAAGGGAAAAGCTTCACCCCCGCAGAGCTGCGTGAGGGCTCGGGGTGCATCGGGGTACGGCTGGAAAGCCCGGAGCAGCTGCCAAGGTGGGGAGAAGGGAAGAGGTTCTGATACAGGTGGCAGTGCAGGCAGGCTGGCTGGGGGCTGCCCAGCCCAGAGAGGGCACAGCCCCACGTGTTGGGTACTGCCATCTTCCCACCATCACAGACAGCAGTGTTACCTGTAAGGGTGTGGCGAGATGCCTGACTATTTTGATGCGTTTTGCAGCCCACAGACAAAACACACAAAGTGGTAATTAAAAATGCTGGGTGCTCTGAGCCCTGCCATTAGCCCGGGCTGATGTGGGCTGTGTGATGTGGTTACAGAGAGGCAGGCTGCATCCTTCCCAGAGGAAGGAGGGCTGGGGCTCCCAGCACCTGCAGAATGCTTCCCTCGCTTAGGTCTGTTTCAGGGCTCTCTCACAGCTTTTGCAGCTCAGTTAATAATCATAAATATATAAAATCTTCCTTGTCCAAATGGTTGGTAGATGAAATCCAGCATCAGACAAAGCTCTAACTAACCAGCTGCTCACTTGAAATAAATATTTATTATGGTGTGAATGGAGTGAAGAATAAACATGTGTCCCTATTTGTTTATGCCGCAAGGATTTGCTTCCCATAAGCAGATGCATTCGCTCCCCCACGTGAGGCTGCTGCAGTCTCCCTGCCTCCTGCCCAGCCTGCGTGTGGAGCTGCCTGGCAGGGAGCCATGCTTGGATGTCCCAGCCTGGGTAGCCGGACTGCTGCACACCTGTAGCCATGGGTGACACTGGCGTCATTCCCTTGCAAGGAGTTTCCCCCATAATGCTTTAGACAGCAGCCAAAGTCAAGCTAAGGGCCCGCTCCCCTTAGCCCTCTCCCCAGGCACAGCAGTCAGGCAGGCTGGGAGGCTCGAAGGGGAGCTGGTGTGTGCCGTGCAGGGGGCTGTGCTGCTGCCAGGTCAGGGAGGTGGTGCTTGCTTTGCTCTGCACGCTGATGGCGTGTCCTGCAGTTGGGTTTCCTTACTGCTGTGAGAACATCATGGCCATAGCTGCGTGTTAACCCTTGTGGTGCCACTTGCTCTCCGTTTCCCAATGAAAATCAGTAATGGCAGAAGTGCTGGAGCACGAGCTCCCGTGCTGAGCAGGAAGAGCACCACTGCTGTTTTCCCATGTGGACCCTTGGGGAGCACATGTTGGCAAAGGGTTGAGGCCGGGCCGTGGTGTGCAGCACCCAACCTCCAGCCCAGCCTCCTCCCAGGGCTTCCTTCACCTCTGCCTGCATAAAAGCCCTGCTGGATTCTGGGTTGCTTTCTGAAATGAGCGCTAATCTCATTACCTTTATCAATTCAATCCTCTTAAGGTGAAGGCAATCCTATTAATCAGCCTTGTGATGTGGAGAACCCCCACACCTCATGGCCAATCCACCCATTGGGCACTGACCGACAGAGCAGCCCCCCCAGCACTGGCAGCCCCTGTCTGCTCTCCCACGTCTGTCCCTGCAGGGCTGGGGCTGCAGGACCTTTCCTGGCACCCCCAGCCCTTCTGCAGGGTTCCTGGTGCTGCCCCTCAGGCACTGTTGGACCCAGGCAGGTGTGGGGTTGCAGGCAGGGCCTGGACTGGGTGGTGACAGAGCTGGCTGCCTTCTGCAGCTTTGTCTTGTGATGGAGCTGCTTCTCCTGGTTTTTGTGTGCTTGAGTGATGCAATTAGCCCGATTGTTTGGCCCTATTGGCACCACAGTGTAGGATTGTTTTCTTGAGCAGGTGTCGGTTTCACACTCAGTGGATTTCACTTTGCAATGAGCCTTTCCACCGTAAGGCCTCCTCCGGAGCAGCCCCCGTTCCCCTGTGCTCCTTCCCTGCCCCAGGCTCACCTTCAGCTGTGTCCGGGCAGTGCGGGGCTGCTGGGGCCGTGCAGGAGCAGCGTTGCAGCAGCTCGTGCTGCAGTAGCTCCTGCTTGGAGCCGTGCTGGAAACCAGCGCTGCCTTGCTCCGCCATGCTCTGGATTTGTTTATTTATGAGTTGTTCCTTCTTATCAGCATATGTGCGGTGACTGAGGTTGCACAGGTTCAGCAATGTCCAGTCTGGGGCGAATATCCTTAAAATAAATGCGGAAGCGAGCCTGAAGAGCACTGCCACAGCCCTTCATTTTTACTGCAGGCCTTTCCCTTCCCCTCTCGACTCTGATGTAATGAAATAAGGCATCTTATTTTCTTCCATTGCCAGGGGCCCTAACTAAAAGCAACCCCCCACTGATCTCTGCTGCTCAGAAACAGGGAGTTTTATTGGCTTTAGTTATTGCATTTTATTTGGAGCTTTGTATGTGGGTGAGTGAAGCCCCCAGAGGGATCCGGGGAGTATTTGCATTCCATTTGTGTCTTCCGAGTGTTGACTGCTGGCGCTCTTGAGGCAGAGATGGCAGATGTGTGATCTGGAGCTGATGTGGCTCCTTGGTGCGGAGGGCTGAGCCACAAGCAGTGCTCCTTCCTGCAATGCCTGGCTCTGCGGCACGGCTCAGGGCTGGCTGGCTTGGCCCCGGGTCACCACGGAGCTGCCGGGCTGCTGAGAAGCCCTGCCTTGTGGTACAGCCCATCTGCTGGTGGTGGCGGGGCTGTCCTGGCACACCGCGCTCCAGCCGTGGCTGCTGTGCTGTAATGGAGCTCCTTGGGCTGCCGGCAGCTTTCCGGGCTGCTCCGGGGCAGCAGGGCTGTTCTCTCACCTGCTGAGCTGCTGGTGGTGCTCAGTGTGGGACGGTGACTGCCACAGATGTTTCGAAGGGATCTTTCCTGGCTTTGTGTCGAGTCACGTCTGACTCATTTTTAATTCTAGTGATTTCTGCCTATTAGCTGAAATCATCAAAACTCACATACTGCTGGCTGGAACCTCCTGCACGGGTCTGCAGCTCAGCGGCCCTGGCAGGCAGCTGGGATCGGTGTGGGAGCTGGCACTGCGTCCCCACGTCCTGCCACAGCTCTGCAGCCCTGCGCTCGGGGGGAGGCAGCGCGGGTCCTCAGCCACGGGAGGAGGAGAGAGCAAACCTGGTTGAGGAGGAGCCGTAAAACTCAGTGTTCCTGAGATAATTAGTATGTTGGGAAAGTGACAGGAAAGAGAATCAAGCAAAGCCAAGGTCAGCGGCTGCTAATTAAGAATCAGCACCTTGTGTCAGCTTGGAATTGAAACGCATCCTGGGAGAGAACCAGGCAGATAAAGGTGATGGAGGTACCCAGATAGCGGCTAGAGGGATTTGAGCAGGAGTTTAAAGTTTCATTTGGGCTTGGCTGATAAAAGGGGCAAAATGACAGAAGATCGTGGAGGGATTCGTGCCTCTGCCTGCAGCCCGGGTGTGCCTTCATCTGGGACAGCAGCACAGTAATGAAGGGCTGTGTAGGTGCAGTGGTTCGGCCTTGGAATGGGCCAGCAGTGCATCCCAGCGTGAGCCTGAGCATTCCGGGTCACAGCTGGGGTTCAGCAGAGGTTGGAAGGTGAGCGGAACGCGCTGCCACGTGTCGGGGTGGAGCTGCTTTCTGAACCTGGTTAGACTTGCAGTGTGCAGGACCTGCAGCTCCACGCAGCACCTCCAGCAGCGCTTGCTGCCAGGGCCCAGAAATGGGCTACGAATGTCTTGTGTGCTCCTGGTGGGTGAAGGGGCATTTCTCGCTGAAGGGTTATTCCTGAGCGAGTTGTTTTGTGTTAGAGGAACGTGGTCTGGAAGAGGTGCCCTTGGCTACAGAAGTGAAGTTGTAGGTCAGCATTCCTGCCTCCTGTACAGGGACTTGGTTTCCATGCAGGATGAGGGGGGTGCTGGCAGCCCAGCTTATGCAGAGAATGGGAGCTGAATGTGTGCTAGCATTAAAACCTGCATGGCATTTCTCCTGCATTAATGCGAGCTACAGCACGCTAAACGTTACACCACATAGTGGATTTTCAGCAGAATGCACTGGGAGTTATGTGACCCTCTGATCACTAATGCTGTTGCTGAGGGAGACGTGGAGCTCAGTCTCAGATGCTGGCTTTCTATTGGCGTTTGCAGTTGAGGAGCTCAGAGCTGTGCACAGGGCAGCTGTCAGTGTGCACACTGCTCTGCTCACCCCTTCCATCGCTGTGCAGCACAGAGGGTTATGAAATTGTGTGGTATTTGGTTCTGTGCAAATCAGCCCAGCAAAGCGCCCGAAATGCATGCTGTAACAGTGCTGTTTATTTTCATGGGTACTGGGAAATAGGGCGTTGGGTAACCCTGGTGCGTATTGCAGGCCTGATTCTCAGCCATTATCTGTGGGGCACAGCTCACGACACCCAGGTTATGCCCCTGCTTTGCAGCCACTGCGGTGTGGTACAAACGCAGCCACACTGAACAGTGGGAAAAATACTTCATCCACAAACCGTGAGGCCAAGGTGGGACCCATCAGAAAGCTGAAACTGATGGAGGGATAAATGTGGTGCAGGCCTGGAATGGATCGTTATGGGGGTGCAGATGTTGTCACTGTGCAGACCGATTTCTGCTATTGTCTCTGGGAGGAGCGGCGCTGTGTGCACGGAGACACCGCAGCGCTCCGCTCCCTTTGTGCCGGGAGCCGCACGGGCTGTGCCGGTACGTGGTGACCCACCATGGGCTTTGCTTTCCAG
Seq C2 exon
GATTTCTTGACTGACCTGATGATGTCTGAAGTTGATCGCTGTGGTGAGAATGAGCATCTCATTTTCAGGGAGAACACGCTGGCCACCAAAGCAATCGAGGAATACCTGAAGCTGGTGGGACAGAAATACTTGCAAGATGCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001419:ENSGALT00000002162:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=WD(100=43.8)
A:
NA
C2:
PF0061614=RasGAP=PU(27.3=95.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]