HsaINT0044766 @ hg19
Intron Retention
Gene
ENSG00000136848 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:17294]
Coordinates
chr9:124522164-124525928:+
Coord C1 exon
chr9:124522164-124522718
Coord A exon
chr9:124522719-124525783
Coord C2 exon
chr9:124525784-124525928
Length
3065 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
TCCACCTCCTGCCTCCCCAGGAC
3' ss Score
10.71
Exon sequences
Seq C1 exon
GACAACAGCCGGCGTGTGGAGCACATCCTGAAGCTGTGGGTGATCGAGGCCAAGGACCTGCCAGCCAAGAAGAAGTACCTGTGCGAGCTGTGCCTGGACGATGTGCTCTATGCCCGCACCACGGGCAAGCTCAAGACGGACAATGTTTTCTGGGGCGAGCACTTCGAGTTCCACAACTTGCCGCCTCTGCGCACGGTCACTGTCCACCTGTACCGGGAGACCGACAAGAAGAAGAAGAAGGAGCGCAACAGTTACCTGGGCCTGGTGAGCCTACCTGCTGCCTCGGTGGCCGGGCGGCAGTTCGTGGAGAAGTGGTACCCGGTGGTGACGCCCAACCCCAAGGGCGGCAAGGGCCCTGGACCCATGATCCGCATCAAGGCGCGCTACCAAACCATCACCATCCTGCCCATGGAGATGTACAAAGAGTTCGCTGAGCACATCACCAACCACTACCTGGGGCTGTGTGCAGCCCTCGAGCCCATCCTCAGTGCCAAGACCAAGGAGGAGATGGCATCTGCCCTGGTGCACATCCTGCAGAGCACGGGCAAGGTGAAG
Seq A exon
GTGCGTGCAGGCCCCTCGGCTCCTGACACAGGCTGGGCGGCAGCACTGGGTTACCTGCCCTTCCTCACATCCGTACATTTCAGGCCTAACAGAGGCCTTGGAGGCACCGGTCACTACCAGAAGGGCTCCCTAAACCCAAAAGTTCTATCGTGGGCTGGGGGTTTTGTACTCCTGCTCTGTGGCTGGAGCTGATCACTGAGGCCTGTGTGGAGCCAGTGGATGGGATTGCAGCTGGTAGTGAGGGAGTGGGCTTGGGTTGAGGTGCCTTCCACCACTGCTGCAGAGGACCGACCCCCTGAGGCGCCAGGGGAACAGGCTGGGTGGCCACGGCTCTCCCAGCACACAGGTCCCACAACGCCACCAGCCGCAGTGAGCCAAACACACGTCCCCTGTGGGGTATGGAGTTCGGCAGACCTCCCCAGCACGATGCACAGATGAGCCTCCCTCACAGCTCTACCTCACCCCACACTCTCACCCAGACACACAGATTGTCACACAGGTAGACACAGTCAAAATTGTACTATTCGAGGGTTAGCCAGCCCCACCCCAGAGCCTCACAGAAGCGGGAATCGTCTGAGACCCACCCAGGCAAGTCCTAGTTCAGGGCCAGAGGTGCTCAATGTCCATCTCCATGACCCCTTTCACCTTCCGCTCCCGAAGATGGGCCCAGCAGCCCACCATGCAAGCCGTGCCTCAGCCCCACCTACCCGGTTTGGGGACAAATGGGCTCCTGGACCAGGGTGCCCCTAGGAAGGCAGTAGAGCATGGTCTGTGGGCCTCGAAGGCGACCTTCTCTCTTTACATTTGCCACCTGCCATTCAGGAAGCTGGCCAAAGAGGGTGGGAAAAAGGGGCTGGACTTGAGGCCTCTGCAGCGTGGATGGACCCTGGTGCTGGGCTAAGGACTGGGCCTCTGCCCTCTGGACAGTGGCGTGTTGTGAGCCAAGTGGCAGGTGGCTGAGGGGCACCCTGTGTCAAGGTCCTAGGCCCTTAGCTCTGGGTCGGGGAGGCACAGTTGGGAGCCATACCCCAGGGCAGAGTCCAGGGCACAAGACTCGTGGAGGTCCCTCACCCTCTCACCTGTTCCTAGAGGCCCTGGAAGGGGAGGCCATGGCTGGAAGCCTCAGCAGCCTCTGCAGCCCCCCTCCCTCTTGCACTTGCTGTATGCTGCAAGTGCAGGGCTGGGGCGGGGACCTCCTCCCCATGGACCCGCGATGGGGAGCAGTTTTCCTCTGTAGTGCTCAGCTACCTCCTCCCTCACCTTCTCCCCCAGCCTTCAGACTTGGCTGGCTAGGCTGCACGTTGGGCCAGCTCTGGCTGCCCCGTCCTTAACATGCTGGTCAACACTGGGGACGTATGCTGGGAAACGGAATGAATCAAGGACCCATGGGCACCAGAGAGGGAGTGATGGGGGCTGCAGAGGCTGCATTATTTTCTGCAGTTGTGTCTGATGTTTCAGTACCTGGTTCCCAGGGCTGGGCTGGGGCTGGCCTGGGAAGCGGATTCCTCCCTGAAGCAGCCTGAAATGATAGGTATGTCCAGGTGCTCGTGGAGGGAGGTGAAGTCAGGGCTGCAGCCAACCCCAAAGGCCCTCAGTGGGATTGGGGAGCAGTAGATAGAAGCATAGAAAGTAACTTGTGCTGCTGGGGTGACAGGTACCTAAGCCCCCACCCCTGGAATACTTGGGAACTAGCCCCTCTTCCGTCTCCACGGCTAGAGGAGTAACGGAGTCTGGGAAGCAAGGGACTTGGACCAGATCTGGCCCCAGGTGGCTGTGTGGCCTTGGACAAGTCATTTTCCTGCTGTGTGTGCATTGGTTTCCCCCTTATTGGGTCCTGGCTCTCAGGAAGTTCTCATCCCAGCACTGGGGCCTGGCTCTCATTGCGGGAGTTCAGGAAGGCTGCAGTCCTGAGCGGGAGCCCTGGAGGAGCCCCGGGGGAGATGCACCTCTGACCCCCGCTTTAGTGTATTCAGAGAATGAGACCCTGGAGGTCGCCTGCTGGTCAGGAAGGGGTCCTCAGGCCACATGATCCCCAGGAAGCCAATGACAGCTTCCCCTTTGCCCCTGCTGTCCCTCTGTGCCTCTGCTGTGCACCCTGGGTTCCTGTGTCTAGATCTCAGTTCTGTTTTAAAGGACCCCAAGGTCGTGCATGTCGGAGTGAGGAATTTCTTGAGCACAGATGCCTGGGTCCACCCCTCCTGGGCACCTTGCAGGCTCTGTGCTAGGTGGCCCCCTGCCCTGACTGTCACCCTCCCTTGAAACTATGACAGTTTTTCCTATTTTCTTCCCCTCCCCCAAGCCACAGGTTAGTTGTGAGCACAAGGAGGTGGGGGCTTCTGAGGGAGGGTGTTAGTATCTGCATGGTTGCTAGAGTAGGGGGAAGGTGTGGGTTCGGGCTCCTGTGCTGGGGTTTTCCCACAACACTGTGTGTGGGACCTGATGGGCCTGGGGCTGCTACCCTGGATTGCCAGGTGGGCAGTGGCGCCTCCACCTTCCCTCTCCAGCCAGTTGCACATCACTTCCTGCTCTCACCTGCCTGAGCATGGTGGCTCACGACCTCCCCGGGCAGTGGGGCTGCACAGAAGGCATCTGTGTCTGGTGTGGGAGCCCCCACCAGAGTCATAGGTGGATACTGATGGCCATTCTTACCATGAGACAGGGCAGCCTCATTTGTCCTCTTTGGCACTGATGGTGCGGGGAGAGGCGAGTCCTGCTGTGGTCACCAGGCCAGGCCTGATCAGGGCTGTACATGGAAATGAGTCCATTCTCTGTGGTGGTGGGGGCTTGTGGCTCCACGTGGCATGCTCTCATTCAGGCTGCCTCCATCCATAGACCCGGCTCTACTGTCACCAGTTCTAGGCTCCTACCCTGGCTGGGGGCCCCTGCCCTGCCCACACTCCCCAGCAGCCCCCAAAGGTGGGCACACTGTTCCTCTCCGGGACCCCCGCAGCTTGGTGATGGAACAGCCTCAAAATGCCAGGACTTCTCTGGCTAGGTCTGGAATCCTAGGGCCCTCCATGCCAGGCCAGCTCAGGTCCTGCTCTCTCCACCTCCTGCCTCCCCAG
Seq C2 exon
GACTTCCTGACAGACCTGATGATGTCAGAGGTGGACCGCTGCGGGGACAACGAGCACCTCATCTTCCGGGAGAACACACTGGCCACCAAGGCCATTGAGGAGTACCTCAAGCTAGTGGGCCAGAAGTACCTGCAGGACGCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136848-DAB2IP:NM_032552:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=WD(100=70.4),PF081746=Anillin=PD(75.9=87.8)
A:
NA
C2:
PF0061614=RasGAP=PU(27.3=95.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)