BtaINT0046521 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008232 | DAB2IP
Description
Bos taurus DAB2 interacting protein (DAB2IP), mRNA. [Source:RefSeq mRNA;Acc:NM_001144082]
Coordinates
chr11:92641260-92644844:+
Coord C1 exon
chr11:92641260-92641814
Coord A exon
chr11:92641815-92644699
Coord C2 exon
chr11:92644700-92644844
Length
2885 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
CTCCTCACCTGGCTCCACAGGAC
3' ss Score
8.69
Exon sequences
Seq C1 exon
GACAACAGCCGGCGTGTGGAGCACATTCTGAAGCTGTGGGTGATCGAAGCCAAGGACCTTCCGGCCAAGAAGAAGTACCTGTGCGAGCTGTGTCTGGACGACGTGTTGTACGCGCGCACCACGGGCAAGCTCAAGACCGACAACGTCTTCTGGGGCGAGCACTTCGAGTTCCACAACCTGCCGCCCCTGCGCATGGTCACCGTCCACCTGTATCGTGAGACTGACAAGAAGAAGAAGAAGGAGCGCAGCAGCTACCTGGGCCTGGTGAGCCTGCCCGCCGCCTCTGTGGCCGGCCGGCAGTTCGTGGAGAAGTGGTACCCGGTGGTGACTCCCAACCCCAAGGGCGGCAAGGGCCCCGGGCCCATGATCCGCATCAAGGCGCGCTACCAGACCATTACCATCCTGCCCATGGAGATGTACAAGGAGTTTGCCGAGCACATCACCAACCACTACCTGGGGCTCTGCGCTGCCCTCGAGCCCATCCTCAGCGCCAAGACCAAGGAGGAGATGGCGTCGGCCTTGGTGCACATCCTGCAGAGCACGGGCAAGGTGAAG
Seq A exon
GTAGGTGCACAGGCCTCGGGCGGGACGCCGCCTCCCGCGGGCCCCGTGGAGGCTGGGGGACAGGCGCCAGATGACCTGCCGGTCCCCGCATCCACGTCATGGATTTCAGCTCTGCTGGAGGCACCAGTCATAGCTAGGTGGGCCCCCTCAATCTGGAGCTGCATCCTGAAGGGTGGGGGCTTTGTGCACCTGCTCCGTGGTTGGAGCTGATCTCAGAGGCAGGTGTGGAGCCCGCAGTCTGCAACACGGCTTGCAGCAATGAAGTGGCTTTAGGGCCTCCCCACTGTCCCAGAGGCCCGCCCCTCCCTGAGGCTCCAGGGGAGCAGGCCATGAGGCCCACCTCTGCCGGCACAAGGGTCCCAGCGACCCAGACACGCACGTCTGGTGTGTGGAGTTATCACACATAGCAGCAGGTGACGGCCAGGGTGCAGCCGCTGTCTGAGCCCCAGCCTCCCCCCACTCCCAGTGCACACACACGGGGCACACAGTCACCGTCGCAGCCGTCTGCTTGGTGGGCAGCCGCCCCAGCTCTGGAGCCCCCTGGAGCAGAGCTTGCCTGAGCCCTCCAGCAGGCCCTGCTCCAGGGCTGGAGGGCCCCTGCTGTCCTCCCCACTGCCTTCCACCTGCCGCCCTGCCAGGCCACGCCCAGCCCCACCCACTCACTGGCCTTTGCAGACAGGTCGGCTCCTCTGGAAGGCTCCGCATGCCTACCTGCCCGTCACAGCAGAACATGGTTCCACCCTGCCCCCTGCCCTGGGCGGGCCTTGGGGGAGCTGCTCAAAAGGTGTGCGGTGGAGAAAGGCTGAACATGGGGTCCATCTGCGCTGCAGAAGGCCTTGGTGCCTGCCCTGGAGGCGAGCCTCTGCCCTCCAGACGTGGCATGACTTGCGGCCTGTGGTGGGGGTGAGGGACTGCCCTCCCTGGTCAGGGTCCCGAGCCCTCAGCCTGGGCTTCGGGGGAGACACAGGTTGGGGCTCAGGCCTCAGCCCCCAGGCAGACGCCAGGGTACGCAGTCCATCTGTGCTCTTATCCTCTCTCTCTGCCTGATCCAGAAGGTCCTGGCCTCCTTTGGGCCCTTCAGAGCCCCTGCCCGTTGGGCTCGTGGTGGGGGACCAGGAGCGGTACTTCCCCGTGGGCGTGGGGCACTCCGTTCCTCTGTGGTTGGACCGCCTCCTCCCCTGGAGAGGGAGGGAAACCAGAGGGAGACCAAGGGAGGCAGCAGAGGCTCCAGCGGCCTCCTTTCTGCCTCTAGTCTGTCCTTTCAGTAAGCGGCCCCATGAGGGCTGGGCCGGCCTGGGAGGCTGACTCTGATCTGAAGGGACCTTTGCTCTCAGGCTCATAGCTGAGACAGGAGAAATCAGGGTGCTCGTTGTGGAAGGAGATGGAAGCCGGGGCTCTAGCTCTTCAGCAGACCTGTTGGGTGGGGGGAGTGACTCAGGCTGCTGGGGTGACGTGCATCTGAGCTCTGAGCCCCTGGGGAGCTAAGGGGTGAGATGCCGCTCTCTGGAGCACGTGCCAAGGGCTCCAAGTCCCGGAAGAGGGCCTTGGGCATGCTTCGTCCCCTGTCATCTCCCCCCACTGCCCCCCTCCCCCAACTCAGTGCAGTAGGAGAAATGGGACCTTCATAACAAGACACTCAGGCCAGATTTGGTCCCGGTAGCTGTGTGGCCTTGGACAGGTCAGTTTCCTGTTCTGTGCCTGTTTCCTGCCCCCGCCCCACCCCAGCCAGGTCCTGGCTCTAAGGAGAGCCCCTCCTCACCCCCGCCTGGGCCTCGCACCTGCCCCAGGAGCTCAGGAGGGCCCGTGGGCATGAGCAGAGCAGCACACGCAGTACTGACGTCTACTGTTCCGTGTTCAGAGAAGGAGGCCCTAGAGGTCACCAGCGGTCAGGAAGGGTCCTCAGGCTATGTGGTCTCTGGGGAAACCAACTGCCACTCTCCCACCCTGGCCCTCCTATTTCTTCGTTGGCCAACCAGGTCTCCAGGGCCCAGAGTTCAGTTCTGTATTTCAAGGCCCACTTGTGATTTCAGAGGGCCCTGAAGTTGGGTGCGTTGGGTGAGGCATTTCTGGAGCATCAGTAGCCCCGGCACAACTCCAGCCACCCGGCCTGCTCTGGCCGGCCCCTGCCCTGTGCCCCCACTGCCCTGGGTCCCTTCCTCTTGCCTCCTGCCTGCCCTCTCCCCTCCCCAGGTCACAAGGCTGGCCGTGGGCGTGAGGAGGCGCAGACTCTGAGGTGGGGGGTGTTTCCACCTGGATGGGTGCAGCAGGTTCCTGTAAGCCTCCCCGCAGTCAGGAGGGAAGGCGTGGGCTCAGGCTCCCTCCTGGGTCTGCCCAGGGAGCTGTGCTGTAGCCAGGCCACCTTCCCACCCAAGCCGAGGTCCGTCTCCCTCCGTCTGAGCCCCGGCTCACTGCCTTTCAGGGCAGCTGGCCCGCCTCTGCCTCTTGTCTTTCTTCCCTGTGAGGCTGCACAGAACGAGCCCCTGTCTGGCGTAGGAGACCTCATCACAGTGATGGGTGGACGGTCGCAGCTGCTTGTACGAGGAGGCAGGGCAGCCTGTTTGTCCTCCGCCCTGGGATGGGGGTACTCTTTTCGGTCACCCCGCCAGGCTGGGGCAGGGCTGAGCAGAGATTTGAGTCCCACGGGTCTGGCCATGATGTGGGGGCTCTTGCCTCGCTGATCCAGGGTCCAGCTCAGATGTCACCACGTCCCCTCATCAGGCTGCCCTGCTCTCATGCCCCGGAAGCCCCCACAGGTGAGACCCAGCAGCTTGGCGATGGAGCAGCCTCCCAGAGCAGGGGCTCCTGGCCAGGGAGCGTGGGTCTGGACCCCTGGGGCCTTACTTGCCAGGCCTGCTCAGGTCTGCTCTCCTCACCTGGCTCCACAG
Seq C2 exon
GACTTCCTGACCGACCTGATGATGTCGGAGGTGGACCGCTGTGGGGACAACGAGCACCTCATCTTCCGGGAGAACACGCTGGCCACCAAGGCTATCGAGGAGTACCTCAAGCTGGTGGGCCAGAAGTACCTGCAGGACGCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008232:ENSBTAT00000032823:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=WD(100=43.2)
A:
NA
C2:
PF0061614=RasGAP=PU(27.3=95.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development