RnoINT0047704 @ rn6
Intron Retention
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13060821-13067241:+
Coord C1 exon
chr20:13060821-13060892
Coord A exon
chr20:13060893-13067230
Coord C2 exon
chr20:13067231-13067241
Length
6338 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
TGTAAAAACTGTGTTTTCAGGAG
3' ss Score
6.32
Exon sequences
Seq C1 exon
GTGACATCACTCAGAAAGGATATGAGAAGAAGAGGGCGAAGCTGCTGGCTCGTTATATCCCCCTCATTCAAG
Seq A exon
GTACGGGCCTTGTGTAACTTGATACTGGGGTGCCGATGTGGCTTAGTGGTGGAACACTTGCCCAGCATGTGATAGGTCTTGGGTCCAGTCCCCAACTCTGCAGGGGATTTTAAAAACTGGTAGATGTTTCATATTTTATTAAGGGCTGAGTAATATGTCCGTTTTTAGATAACAAAATCCAAAGGCATAGATTATGATTTACAGCTTTGGCTTGATACAGATCTCACTCCCAAATATGACTTACTCTATTTCTGTGGTCACAGAGTGGCTATAGATTTCCTTAGTAGGCAAGGACACGTTATAAATTTTTGGATTCTTTGCACATTAATTTGCAGATTTGGCCAATTCATTATCTTGGATATTTTTTAATAGAACTTTATGACCTAATTCTAAAATGTATGTCTTAAGTACAAAAGGTCAAGAGATCCAAAGTGTGATGGGGGGAGTTGTCTGGCTAGTTATTAAGAATTATTATGTAAATGATTTAATTAATTAAAGTAAAGAGATCTAAAAAGAGAGAGTTATTCTAGGGCCATCATCCCTGAGAGTAGGTCGCTTTGCAAGGACAGGTGGATAGTGGGACAGAAAGGCTGGCCCAGATGCACACACACACATACATAATGGTCTTGGTTTAGGAGAGATAGCATGTGGCTAGGGTGTTGGCATACCCCCAGAACCTACATAAAATATATACAGTGAGAGACCAAAGTTAGCTTCAGGTGTGTTAGGCCCAAGGGCGAGAGGCTGGAACTGTAGAGCAGTGGGAGGATCCTAGAGGGGAGTGTCATCATCTCAAGGTAGGAAGGGTTTCTTCAGTTGCTGGAGATGCTACTGCTATAAGAGCAGCCATAAGAGAAAAGGTGAACACGTTGAGATGCATTAAACCTAACAGCTTCTCTGTAAGATCAAGAGGTACCTCAAAGAGAATGAGAAGTCCACCGCAGGCTGTGGGAGGATGGTCGCAGCATAAGTGATAGAACAAACAGCTCCAGAGTGTACAGGCACCACTGCCTGGTTGCTCTCTCTGCAGTTGCAGACAGGCATCTGAATGCCCAGGGGGCTATCATGAGGCATGGGGACAACTGAGTGCTAGGGGGCTATCTTGTGCTACTAAGAGGCCATGTTTTTTAACGTGATAAGAAGAATGGGTGAAGATTTAAATAGGTTCTTCTCCTATTTTCATAATGATGATGATGATGACGATGATGATGGTGATGATGTTGATGATGGTGGTGATGGTGGTGGTGGTGATGATGATGATGATAGTGGTGGTGGTGGTGATGGTGATGGTGGTGATGCCACCTAACTTCTCAGATAGTCAGAGAAGTACAGATTAAAACCTGACATCCCTGTTAGAGCCAGTGTGGATGCATCTGTGTCACCTGATGCCACAAGAATGTCCATCATGACCCAAAACTACCAAGATTTCCAACCAGCCTTGCTCAGAAGAACCCAGACATAGAATACCCGAGCATCTGGACACCACCAGTGGTGACCCTCACTGAGTTGATGGTTTTGAAGACAAAGTAGTGTGGCCAGCATGAGCTCTGGAAGCAGACACTGGGGAGGCAGAGGCAGGGGGATCTCTGTAAGTTCTAGGACAGTCTCATCTACATAGTGAGTTATAGCCAGGGCTATATAGAGAGACCTGTCTGAAGTAGCAGTAATGATAATAATAAAACAAGTAATCAAATGATGAAAAATACAGCATAGATCCCTATGAAGTAATAAAGGAGGAAAGGAAAGGGGCTTCTAGAATGGAGCACATTGTTCCCCGGTAGACATGAACCTGGACAGGGCAGGGCACGCCATCTTCAGCTGCCGGAAACTCTGATTCTTTTTCTTTCTTCAGACTTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGTGTGTGTGCGTGTATGTGTGTGTGTGTCTGTGTGCGCGTGTGTGTGTGTCTGTGTGTGTGTCTGTGTGTGTGCGTGTGTGTGTGTGCGCGCGCGTGTGTGTATGTGTGTGTGTGCACGTGTGTGTGTCTGTGTGTGTGTCTGTGTGTGTGTGCGCGCGTGTGTGTGTGTCTGTATGTGTGTGTCTGTGTGTGTGTGTGCGTGTGTGTGTCTGTGTGTGTGTGTGTCTGTGTGTCTGTCTGTGTGTATGTGTGTATATCTGTGTGCATGTGTCTCTCTGTGTGTGTCTGTGTGTGTGTGTATGTGTGCGCGTGTGTGTGTGTGTCTGTGTGTGTGTATGTGTGTGCGTGTGTATGTGTGTGTGTCTGTGTGTGTGTCTCTGTGTCTGTCTGTGTCTGTCTGTGTGTATGTGTGTATATCTGTGTGCATGTGTGTCTGTGTGTGTGTCTGTGTGTGTGTGTGTCTGTGTGTGTATGTCTATGTGTGTGTATGTCTGTGTGTGTCTCTGTGTGTGTGTCTCTGTGTGTGTGTCTGTGTGTGTGTCTGTGTGTCTGTGTGTGTGTCTGTGTGTGTGTATGTCTGTGTGTGTGCCTGTGTGTGTGTCTCTCTCCGTGTGTATGTCTGTGTGTGTGTGTGTAAACTCTTGGAGTTGCCTCTGTCCTTCCATTTTGCTAAAGCAGGGTGTCTGGTTTGGGCTGGGTTTCCTGGTTGCTTCCCATGTGTGCAGAGGAGTGTAGGGACTGTGGATGTGGCCACCGCATCTCGCTCTTTACACGGGTACCAGGGGTTAGGATGGTGCAGTGGGCACCTTTGCCTGCTGAGCCGTCTCGTTAGCCCATGCTTAAATAATAATCATTGTAACATCTTATAGATAATAATAATTACTGCCACCCCTTTAACATACTTATTTCTTATGTGCATGTTTTGCTTATGTGTGTGTTTCTGTGTACCACGTACATCCCCCATGGAGGCCAGATGTCACGTCTCCTAGAACTGGAGTTAGAGGTGGTGTGAGATGTCACATGGGCTGTGGAAACTGAACTCCTGTCCTCTGTAAGGACAGCAAGTAACTAATTACCACTGAGCCATCTCTCCAGCCCCACGCTTTATTTCTTAAACAACGCAGTGGCTACATTTACCCTTACGCAATGCATCCTAAACTGCCCAGGCTTTATACCGCTGGTATTGGAATATTTATTAATAACAGAGCTCTACTGTTGAAGATGCCGGTTATGTATTGGTATTTGTTCATTCAAAACAAAAACAGTAAAGTTGGGGGTGTGGTGGCGCACACCTTTAATCTCAGCATCAGGAGGCTCTGAGTTCGAGGCCAGTGTGGTCCATAGAGCAAGTTCCAGGACAGCCAAAGAAACGGTAAAGGCCACAGTAAAGTTGGGATGGAAGGAAACTGTAAAGCCCTCTTTCCAAAATCACTAACGGCCCAGCCGTGAGCCAGAACGCCGCACATCTTAGCCGTTCCCTTTCCTAGCGAGGGACAAAGGTGACAGCATGGGGCGGGAGAGGGGGAGCCAGGACAAAGTTGACAGTGGAGAAGAGAAGATCTTTGTGCACAGGGACATTACCGTGTGCCTGGGAGGCTGCTTCTGCAGCTGCTGGAATTAGTGAGGAGTTTGGGTTTTATTGCGATTGTAACTTTCGAGACTGTGCGATCATAAGTGGCTGTTATCTTTCAGTACTTCTATTTTGAAATAGAAAACATTCATTTAAAACGAAAATACACTGTCAAATACTAATACATTTAGCAAGAAAAATACAGGATCTCTATTGGAATCATAAACTATATTTAGAAGACATATCCAATACCCAAAAATATGAAAAAACATAAATCACATAGGTGGAAGAAATTCAAAGGCCAGGAAATGGAAACGGTAATGAACACTAAATCATGTTCACTTTACTGGTAGATGTGGAGGTGCAAATTAGAGTGAACTGTCTGCTTAGGTTAGAAGAATCCTCAAGCTTTCCCTAAACTCACACTGAGACGTGTGCGAGGGTCCAGTACTTAACACCCATTGCTCGTGTGTGTGAACCCCTGCAGCCTTCCTGGAACGTTACCTCCTGACTCCTGCTGCAGGTAAACATGTATCTTCCCGGGACTGGAGACGCAGTTCACAAATAAGAGCGTGCCCTGCTTCCCTAGGGACCTGAGCTCAGTTTCCAGAACCCATGTCAGGGGGTCGCCTCTGACTCCCTCCAGGGAGATCTTCTAGCCTCTGTGGGTACTTGAACTCATATGTGTGGACATATACACACGGACACACACACAGAGACACGGACACACACACACACATAGGGACGCACATGGACATACATACATGGAGACACGGACACACACACACACAGAGACAGACACGGACACACACACACACACACACATAGGGACACACATGGACACACATGGCCACACATACATGGCCACACATGGCCACACACACATACCGTGCCTCATATATGTAATTTAAAACAAACTTAAACCTAGTGTGGTCCATAATGCCTTTATTCCAATTCCTTAGGAGGCAGAGGCAGGTGGATCTTTGTGAGTTCTGTGAAGTCTACATAGCAAGGTCCAGGTTCCAGACTAGCTAGGGACACACAATGAGACATTGTCTACAAACAAACAAGACATCTTCCCCCGAGTACAGTAATTTCAGATCGGTTTTTGTTGTCTCTGTGGGATAGTACATCTGTCTGAAGGATAAGGGCACCCCCGTTTTGGAAAGTATCAAATGGATCACTGTGCAAGGTACCACTTCTTTATCCTTAATGCCTGACTACTAAGCGTTCTTCAGTGAAACTTTGAAGTAGTTCTTCCGCCTAGTAGGGCCACTGTTCAGTATTGTCCTAGACCTGTACATGTACACGTATGTGTGTGTGCCTGTGTGCTGTGTGCATGTGCTCAGATTTGGAAGACGTAAGCACAGATTTCTGGAGCAGCCTTTCTCCTTCTCAAGTGCTGTATAAGCAGCCATGCTAGACCGTGCCACAGCCCCTATTACAGTGCATCTTGGGGCAGCTCAGAGGGTAGCACTTGGGGATGCAGTGAGAGTGGAGTAGATCTGAGTTGGGGGCTTGTGAGGGTCCCCTCATCGGCTTCTGGGTTGGAGGCTCATCTGCTTCTGTTTCCTGTTTCCTCACAAGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTGGAATTAGTACATTGGACTTTACAGGCACAGCAGAGAGAGATGTGTTGCTTCGTGTGACCAGTCTTAGAGGTCAGGTAGTGCTGTGTTCCTACCCAGGATGTCCGCATGAACTCTGCTTGTCTGGGGGTGTGGTTAGGACAGGAGGAGCCAGTGAGATTGGAATGTCCGCTGGCTGGTCTTACAGAGCATTTTCAAACAAAGCTCAGGACATCAAGCTCTCTCTTCCTGAGTCTCAGCTGAAGGTTCTGCTCTGTGCCCTTGCAGCTGTTAGCAGACTAGGATTGGAATGAGACCAGAGGCTTTGTGCAGTGACTGTGTACCCTGGTAGCTCTCACTGTCCCGCATCCTGGGTCGGGGTGCTATCACTGTGAGCCATCGGCTGGGGATGGATGGAGAGTAGGAGGCATGCTCTGTTGGTCCCAGATTTGTAGACAGAGCCCACAGCGGTGCTACTCACTAGACCAGGTTGCTGGCCTCTGAGCATTCCGTGCTCTGAAGTTGTTCAGTGTTATTCTTGGTGTTTTACTCCCTACCTCTCCACTTTCCCCTGTATTTAAGGCACTGAGGATGGCTGATGGGCTGTTTCTCACTTAGAGTTTGCTGACACTGTGGACCACAGTGGTATCCAGCAGCACAGGCCACTTTAGATTATGGAACAGCCTGGATGCATGCAGGAACCAGCTCCTGAAGAGCTGTGGCTAACACGTGAGACTTAAACTGATGTGTTGTGTTGCCAAGGGTATCCCAGGGGAGTAGTTATCGTCACAGTTATGAACCAGAGGCTGGACTAGGTCTCGTGATATGGAGAGAAGGTGGTCTGGATGTGGACTTTGCTCTGACCCTTGTTCGTGGCACTTGATCCCAAGCCAGAGGCTCTTTGTGCTTGAAGAGCCTTACTAGGAGCCGTGCAGCATTCACTGTGGCCATATAAGGGAAATGCACAGTTTTAAATGGGGCCTTTTTTTTTTAAAGGATTTATCGCGATTGTATGTATATAGTAAGGTACACTGTAGCTGTCGTTCAGATACACCAAAAGGAGAATGGATCTCTTTACAGATTGTTGTGAGCAACCATGTGGTTGACTGGGATTGAAACTCGATGAACTCTGGAGAGCGAGTCGGGTGGCTCTTAACCACTGAGACACATCTCTCCAGGGCCACTAAATGGGGCTTTTTTATAATGGGGAAAGCAAATGTTTACACAATGTGTAAAAACTGTGTTTTCAG
Seq C2 exon
GAGTGGACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212:ENSRNOT00000066017:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=FE(21.6=100),PF051207=GvpG=FE(51.1=100)
A:
NA
C2:
PF064646=DMAP_binding=FE(2.7=100),PF051207=GvpG=PD(2.1=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]