RnoINT0059652 @ rn6
Intron Retention
Gene
ENSRNOG00000043219 | Fbn2
Description
fibrillin 2 [Source:RGD Symbol;Acc:620910]
Coordinates
chr18:53077059-53078933:-
Coord C1 exon
chr18:53078805-53078933
Coord A exon
chr18:53077179-53078804
Coord C2 exon
chr18:53077059-53077178
Length
1626 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGCTTGGATTGTTTTTGCAGATG
3' ss Score
8.03
Exon sequences
Seq C1 exon
ATAACAATGAGTGTGGGTCCCAGCCTTCCCTCTGTGGAGCAAAGGGGATCTGTCAGAACACTCCTGGGAGCTTCAGCTGCGAATGCCAAAGAGGCTTCTCCCTGGATGCCTCTGGGCTGAACTGCGAAG
Seq A exon
GTGAGTCCATGTGCACAGGAATCCTGAATGTGGAGGGCTCAGAAACGGTCTCAGAAAGCATGTGCCGTTCACCCTGAGTTCAGATGCCCAGCACCCAGGTAAAAGCCAAGTAGGCATGGAACCTCTTCTGTAATCCCCTTGCCCTGGAGGCAGGATTGGAATCTGCAGAGCAAGCTGGAAAGCTTCACTAGAGAAATCAGTGAGGTCTGGGTTTAGCAAAAGACCCTTCCTCAACATACAAGGAAGAGCGCAATACAGGAACACAAACACAGACACACGTGTACATGCACAGGCACACACATGTGTACACAGACACACACAGACACAGACACACGTGTACATGCACAGACACACACATGTGTACACAGACACACACAGACACAGACACACGTGTACACACACACACACTCACTGCTCCCCACATGTACACATGTGCCCATGCACAAAAGAACATGCACATGTATGCGCAGCACATACATACACACAGACAAAAATAATATTTAAACTCTGCACCCATCGCGCCACCCATGAGATAGGTAATTTTCTCTTGGAAAATCCTAAAGAGGAGCTGATTGGGAGAAGAGTCAGAAAACTGTCACGTGGGGCTCTGCAGTGTTCACTTGGCACATGCTCGCTCACGTCACGTACAGGAAGGCAGATACATTAGTGTTGCGTGTCTCAGGTTATGAGACCAGCCACATCACCTCGAGTGTTTATATCGTGTTGGAATTTACATTTTCCAGTTAGTCATCCTTTTTTAAAGTCATTCCTAGAAATACGTGATTTTCCACGCTAGATACAATCAAAATACTAAACACGCTCTACGAATTATACGACTTTTGTGTGCATTTTTCAGCCATTTTTATTTAAAAATTGTAATTTTAGCTTTTGTATTTGAAATCAATAGTCATTGAAAGCATTCCGAGCCTACAGCTGCTCGCCATGTGTGAGTTCAGCTCGTGACCATCCACATAAGATACCATTTATTAATTATCCATGTAAATTTGTTACACACGCATCACGCATGCCAATTCTATTTCACTCTTTTGGGGTAGATTTCAAAAGCCTTAGTTGTCATTCCAAAATTGTATGCATATATTAACAAAGAAATTATTCCATATGTAGTACCACATCTTGCCTAAAAATAACAAAGTATCCAAATCCTTGAAAAGGATTTGCATCTAATTAGTCTTGACTGGGAATAAAAAAATTTTCTCATGCAAAACCATTGTACTTTAGAGATAACTCCGTAGTATTTGTATCTTACCACAATGGGGAAAGATACATATGAGTCACTTTTGAATCAACTACAATCTTCAATGCAAATATAGAAAATTTGCCAAATAAACCGTACCATATAGAGCCAGTCAACTAAAACCGTACCACAGTTGTGGCGACTATGGTTGATTTGCTGAAATTACAGTTACTCAGAGTGCTGGTGCGCTGTGGTCTGGTGGACAGCATAAGAATCAGGTGGTTTCTTACCTCAGCCATTCTTTGCACCATCACTGACTAAGAAAAGCCCAGTCCCATAGGCTGTACGTTGCTTGTTTGTTCCCTTAAAGGTTGCGTTTGGAATGCATTTACCTAGGGAATGTGAAGACCGTGCTTGGATTGTTTTTGCAG
Seq C2 exon
ATGTTGACGAATGTGACGGAAACCACAGGTGCCAACATGGCTGCCAGAACATCCTGGGGGGTTACCGGTGCGGCTGCCCGCAGGGATATGTCCAGCACTACCAGTGGAACCAGTGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043219:ENSRNOT00000066548:54
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAATGAGTGTGGGTCCCAG
R:
CGACACACTGGTTCCACTGG
Band lengths:
247-1873
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]