GgaINT0062453 @ galGal3
Intron Retention
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55654586-55656354:-
Coord C1 exon
chrZ:55656226-55656354
Coord A exon
chrZ:55654712-55656225
Coord C2 exon
chrZ:55654586-55654711
Length
1514 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
GTTCTATTTCTCTCCCAAATGCA
3' ss Score
-0.31
Exon sequences
Seq C1 exon
ACAACAATGAATGTGGTTCTCAGCCATCACTCTGTGGATCAAAAGGAATTTGCCAAAACACTCCTGGAAGTTTTACCTGTGAATGCCAAAGGGGATTTTCTCTGGATTCTACTGGATTAAACTGCGAAG
Seq A exon
GTAACTAGTGAAGGTCAATTTATTTTTATGGTGCAAATCTATACCTCTGTGTATAGTTGGTCCTATGATGTCAAAGATAATCACATTCATAAAACAGAGCAGCAGACAGAGTAGTAGTATGTAGCAATAATAAATAGGAATGTATTTGAGGTATTTAAAACATAAATGTAAGAATGTACTGCCTGATTCTTTCTCAAACAAGCTAGAATTAAAAAAGGCTACTTAGTTAGATTCTCAAACAACTCTTTTCAGAGTGTGATCACCTTCACATAAGGCTTATGCATCAAAAATGTATTATTTTTTTCCATTTCCACCTACTCTGATATGAATCTCTATCATTTTTTTTCCTAATTGTAATCATCTTCCTGAAGGTATCTGATATCAGGTTCTAAAATCCCTACATGTCTTCTTCTATAGCTTAGTCTTTCTCTCTTGGTCCAAAAAGGAGCCCCAGATGAGAAATCTGGATTCCAGAGTTCCAGTGTCTTTAGTGAGTCTCAGATAGTGAACAAAGAGAAAAAAGGAAGAGGTGCACAAATTTATGACACGTCAAAATGTCAGTTGCTTTGATGAAAGTATTTAAAATAGGAATTGATATTTGGAGTGTATCTCTACAATAAAAGTGCAGCATATGCCCAGCTAAAAGTTGTAGAAAACATTGTCATCTGTCAGTTTACTTTGTTCTTGCTTACTTTACCCAGTAGGCATGAAACAAAACACTAAATTACATGTACCAAAGCATTCACGACATATGTAACTAACTGGACCATCAGAACTGCTATATGTGCATTTACTGACGAAGGCACAGCCTGGCAGTGTGGTTTTCTGGACTTCAGGTTTAGGGACATCCCAATTCCATGGAATTTGTGGACAGCTGTAGACAATTGGAGTGTAACTTAGTATTTGCAGTATCATTTTTTTATTATTATTTTTTACTGGCATTGCAAGCTGTACCTGACACACTTGTCTACTTACAATGGCTTATTATATTCTTATAGCAGACTGTATTTCAGATTGTCACGTCTTTACATTTCAGTTTTATTTGTGGCTGTCTCCTTTATTTACATATTGATCACAGGCTTTTTGGATGGCTTTTTCTTTTTAATTGCTAAGGTGAACAACTGCACTACAGCCAAATTTGCTGTGTTCCTCACATTCGAACACTTCAGCGTGTTTTAGGAAACTTAAGGTTCAGTCCTGCAGAGCTGGTTTGAAATCTTAAGTCCAATTCCAATTGTGTTCTAAACATAACATCAAAGCAACATTATGTGTAATTACGCGGAATAGTCTTTCCGAATCTGAGTCATGTATAGGTTCAAAAACCATTTGATTACTGATTGATAGGAAGAACTCTATGTGAATTGAGCATCAGGCTTTCCAAACAGACAACCTCAACAGCTTAGAACAGAATTCCTATGTCAAATACTGGTGTTTGACTTATCTTCAAAATGAGTAAAGTATTTTACAACATATATCTTGATGTAATTATTTCATGTTCTATTTCTCTCCCAAAT
Seq C2 exon
GCAAAGATGTGGATGAATGTGATGGAAATCACAGATGCCAGCATGGCTGTCAAAACATCCTAGGTGGATACAGATGTGGATGCCCACAAGGGTATATTCAGCATTACCAGTGGAATCAATGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686:ENSGALT00000023666:69
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5)
A:
NA
C2:
PF126622=cEGF=PD(12.5=7.3),PF0000822=EGF=WD(100=73.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAATGAATGTGGTTCTCAGC
R:
AACACATTGATTCCACTGGTAATGC
Band lengths:
254-1768
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]