GgaINT0062453 @ galGal4
Intron Retention
Gene
ENSGALG00000014686 | fbn2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C3A6]
Coordinates
chrZ:56595174-56596942:-
Coord C1 exon
chrZ:56596814-56596942
Coord A exon
chrZ:56595294-56596813
Coord C2 exon
chrZ:56595174-56595293
Length
1520 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TTTCTCTCCCAAATGCAAAGATG
3' ss Score
2.78
Exon sequences
Seq C1 exon
ACAACAATGAATGTGGTTCTCAGCCATCACTCTGTGGATCAAAAGGAATTTGCCAAAACACTCCTGGAAGTTTTACCTGTGAATGCCAAAGGGGATTTTCTCTGGATTCTACTGGATTAAACTGCGAAG
Seq A exon
GTAACTAGTGAAGGTCAATTTATTTTTATGGTGCAAATCTATACCTCTGTGTATAGTTGGTCCTATGATGTCAAAGATAATCACATTCATAAAACAGAGCAGCAGACAGAGTAGTAGTATGTAGCAATAATAAATAGGAATGTATTTGAGGTATTTAAAACATAAATGTAAGAATGTACTGCCTGATTCTTTCTCAAACAAGCTAGAATTAAAAAAGGCTACTTAGTTAGATTCTCAAACAACTCTTTTCAGAGTGTGATCACCTTCACATAAGGCTTATGCATCAAAAATGTATTATTTTTTTCCATTTCCACCTACTCTGATATGAATCTCTATCATTTTTTTTCCTAATTGTAATCATCTTCCTGAAGGTATCTGATATCAGGTTCTAAAATCCCTACATGTCTTCTTCTATAGCTTAGTCTTTCTCTCTTGGTCCAAAAAGGAGCCCCAGATGAGAAATCTGGATTCCAGAGTTCCAGTGTCTTTAGTGAGTCTCAGATAGTGAACAAAGAGAAAAAAGGAAGAGGTGCACAAATTTATGACACGTCAAAATGTCAGTTGCTTTGATGAAAGTATTTAAAATAGGAATTGATATTTGGAGTGTATCTCTACAATAAAAGTGCAGCATATGCCCAGCTAAAAGTTGTAGAAAACATTGTCATCTGTCAGTTTACTTTGTTCTTGCTTACTTTACCCAGTAGGCATGAAACAAAACACTAAATTACATGTACCAAAGCATTCACGACATATGTAACTAACTGGACCATCAGAACTGCTATATGTGCATTTACTGACGAAGGCACAGCCTGGCAGTGTGGTTTTCTGGACTTCAGGTTTAGGGACATCCCAATTCCATGGAATTTGTGGACAGCTGTAGACAATTGGAGTGTAACTTAGTATTTGCAGTATCATTTTTTTATTATTATTTTTTACTGGCATTGCAAGCTGTACCTGACACACTTGTCTACTTACAATGGCTTATTATATTCTTATAGCAGACTGTATTTCAGATTGTCACGTCTTTACATTTCAGTTTTATTTGTGGCTGTCTCCTTTATTTACATATTGATCACAGGCTTTTTGGATGGCTTTTTCTTTTTAATTGCTAAGGTGAACAACTGCACTACAGCCAAATTTGCTGTGTTCCTCACATTCGAACACTTCAGCGTGTTTTAGGAAACTTAAGGTTCAGTCCTGCAGAGCTGGTTTGAAATCTTAAGTCCAATTCCAATTGTGTTCTAAACATAACATCAAAGCAACATTATGTGTAATTACGCGGAATAGTCTTTCCGAATCTGAGTCATGTATAGGTTCAAAAACCATTTGATTACTGATTGATAGGAAGAACTCTATGTGAATTGAGCATCAGGCTTTCCAAACAGACAACCTCAACAGCTTAGAACAGAATTCCTATGTCAAATACTGGTGTTTGACTTATCTTCAAAATGAGTAAAGTATTTTACAACATATATCTTGATGTAATTATTTCATGTTCTATTTCTCTCCCAAATGCAAAG
Seq C2 exon
ATGTGGATGAATGTGATGGAAATCACAGATGCCAGCATGGCTGTCAAAACATCCTAGGTGGATACAGATGTGGATGCCCACAAGGGTATATTCAGCATTACCAGTGGAATCAATGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686:ENSGALT00000023666:61
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAATGAATGTGGTTCTCAGCC
R:
ACACATTGATTCCACTGGTAATGCT
Band lengths:
246-1766
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]