BtaINT0061148 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26906202-26908132:+
Coord C1 exon
chr7:26906202-26906330
Coord A exon
chr7:26906331-26908012
Coord C2 exon
chr7:26908013-26908132
Length
1682 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGCCGGGCTTGTTTTTACAGATG
3' ss Score
9.7
Exon sequences
Seq C1 exon
ACAACAATGAATGTGGGTCCCAGCCTTCACTTTGTGGAGCAAAGGGAATCTGTCAAAACACCCCTGGAAGTTTCAGCTGCGAATGCCAAAGAGGGTTCTCTCTTGATGCTACTGGACTGAACTGTGAAG
Seq A exon
GTGAGTTTATTTATTTAAATATTCTTATTCTAATACAGCAAACTGTTTTAATGTCTAAGCCACTCAATGAGAAATTGAGATCATCTCAAACAACAAAGATTAACAAAGTAAAACCCAGAAGTTGATTTTTTTTTGTTTATAAATGTTCATATATCATTTCGGGGACAGAGGAAAACCTTAATGTGATGAAACAAAAATTCTGTGAGTACACATGGGCTTTTGAAATAACTGTTTACCTAGTTACTGATCTAAAAAAAGAATTTAACTGAAAATGAATTCCTGTACCTAATTTAGCTGCAGTAGTATATGAGTAAACCAGAAAAAAGTCTGATGTCTATTCCATGATACTTGAATATAAAATGTATAAATGTTAAGTGTAAGACAAAGAACAAGTTGTAGGGAACTGGGCAGATGAACAGAAAGCGCTGGGGAAAACTGATGGCGGTTTTATTTGTCTGAGAGTCCCAGTTCCCTGTCTTTTCTATGAAGAGTGTTTCCTATAAAGTCTTCATCACAATAGATATTTCCTGTTAAATCCAAGGGAAAATTTAAGTGGGAATAAAATAAGAATTTGCCTGTGGCCAATAAAATACTGTTCTTCAGTATTTTCATTGCAAGTTCTAGAATATGAGATAAATATACTACGATTGGTAGCTTTTACAAAATACTCATGCCAGAGGTTCTGAGAGCATGTACTTCCCCTTTATATTTTATATACTAGTGCAATTTACATCTTTATTGATTTTAGTCACCCTTGAATTAATTATTCTTACGAATACATGATTTTGAACTCTAGAAATATATTTACAGGTTTTAATATAGTCTGAGAACTACAGGACTTTTACATGTATCTAATCTTCAACCAAAAAAAATTCAACTGAAAAATTTCTATTTTAATATTTTGTATTTGAAGTCATTGAGACTTTGAAAGTATTCTGAGCCTACAGCTGGTTGCCATGTGTGAGTTCAGCTTGTGACTATCTACATAAGATACAATTTATTAATTATCCATATAAAATTTGTTACACATATATCAGACGTGCCAATTTCATTTCTCTTTTTATGGGTAAATTTTAAAGCCTCAGTTGTCATTCCAGAAGAGTATGCATGTATGAACAAAGAAATTATTCCATATGTGTCATAATACTATATCATGTCTAAAAATAATGTATTTAAATACTTTAAACTTGCATCTAATTAATCTCAAATAGTAATAAAATTTTTTGCATTCCCAACCATTATAATTCTTTAGGTATTTCTGTAATGCTTGTATTTTCCCGAAAATGAGAATTAACATGTCAATCACTTTTGAACTTACTGGAATATGTGATGCAAATATATTTATATCATTTACCAAATAAATCATACCATATGTAGTTAATCCATCCAAAATGCACAACATTTGTGGTTGCTATGGCTGATTTGCTGAAATTAAGATATTATTTAGAGCACTGACGTGGCATGGCTGGTGGATAGCATAAGAATGATGTGGTTTCTTATCTCAGAGCCATTCACTGTACCACCACTGACTTAATAACCATGTGACTTGGAAAAAATCACAGCCCCTCGGTGTGTCTTGTTTGTTTGTTCCTCTGATAATAGTTACCCCGTGTTGTGTTTGGAGTACATTTAAGAATAATAGAAGAAAGGTGATGAAAATCTTGCCGGGCTTGTTTTTACAG
Seq C2 exon
ATGTTGATGAATGTGATGGAAACCATAGGTGCCAGCATGGCTGCCAGAACATCCTGGGAGGCTATAGGTGTGGCTGCCCGCAAGGGTATATTCAGCATTACCAGTGGAATCAGTGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307:ENSBTAT00000020360:95
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGAATGTGGGTCCCAGC
R:
CAACACACTGATTCCACTGGT
Band lengths:
246-1928
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]