RnoINT0064413 @ rn6
Intron Retention
Gene
ENSRNOG00000005498 | Gcg
Description
glucagon [Source:RGD Symbol;Acc:2668]
Coordinates
chr3:48448546-48451650:-
Coord C1 exon
chr3:48451600-48451650
Coord A exon
chr3:48448651-48451599
Coord C2 exon
chr3:48448546-48448650
Length
2949 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CCCACTCTGTGTTCCAACAGGCA
3' ss Score
11.37
Exon sequences
Seq C1 exon
TCCCAAAGGAGCTCCACCTGTCTACACCTCCTCTCAGCTCAGTCCCACAAG
Seq A exon
GTAAGAGGCACACTGTGGGGTGGGGATGTCTGGAGGACATTGGACAGTGAAGTATATGTGAGAACTATGGATTAAAATGTTGTTTTCATCTCTTTATTGATAGGACTATGAAGAACACAGTTGAGGGCAAAGCGTTATTGATCAGATTTATACCTACTTTACTGTAATGAATTCGCAAATTACTTGAGAACTAGTATGGTGTGCTTATAAAAAGAAAGGAAAACAAAGATTTAGACCAGTGCATTTGTTACAATGTGAACAGTATGTTCAAATAAGTAAATACTCTGAACAATAAGTATTTCTGCTTTGACTTGAAAGATGTGTGTGCTACTTTGAACAGAAGGGGCTTTTTAATTTCACAAGAAAATGTGTCCATTACCAGGACTGTAAGGGCAGTTTTTCTTTGTGAATTAAAAGCTTCTCCTTAAAGCTCTTGTTTTATAAAAGAGGATGTTCAATATCATCTTTTAAATATCCAGACTTCTAATAGATTCTCCAAGAATCAAGGCCGATATATGAACCCTCTGTAAGTTAAAGCCAGCATCTTTGGAGCAGAAAATAAACATCACCAATAACTGGCAATATCTTCCTATGAGTTATAAACTAACGGTTATTTACCATATATCGAGCACTAATGGTTGGAAAGAAAACCAAAATAGCTTCATCTGGAATGATTTTTTGCATATCTCTTTAGAAAGATCAGTTAGGTATTCTGAAGTAACTATTAACTTCACAGAGAAAAAGCTCCAATTCACAAATGCCAGCAATGGCATCCGCCATCAAGCATAGTGTTTCGGTAAATTCTAGGGCAGTTATTTCTTAATCTGTGGGTCATGACCCCTCTGGCGTACAAACGACCCCCTCATAGTGTTGCATGTTAGACATTTACATTATGACTCATAACAGTAGCAAAGTTACAGTTGTGAAGCAGCAGTGGAAATAATTTATGGTTGGGGTCACCACAGCCTGTGGGACTGTATTAGAGCGACACGGCATTAGGAAGGTTGAGAACCACTGCTCTACGGACTCCTTATTAAAGGAGATAAGGAAGTACAGAGTGTTTATGTGCCCTATAACACCAATGCATCTTAGGAAAATAAAGTCATCTCTTCTTTCCTAAATCTAAGATTCTTTTTCTAAGACTTTCCAAACAGAGTAATACTTTGACTACAGTCTCCTTTTAATTTTGATTGGAAAATTGTGGTATTTTTTGTTTTGTTTTGTTTTTCAAAAATACCATTCTCCTTTTTTACACTAGCAAAGACAGGGGAGAAATAACTGTAAAATCCTTACTAGATACACTGTTGATGCTAAAATATTTAATTCTCAACAATAATATTAAAGCAATGGATGAATTATTTTATTTCTCAGAAGTCTCTTAACTTCCAAAAAGTGGATAAAGGAAAGTGAGTTGTATCAGGAGGTTGCATTAGAAGGCGTATGTTCTCAGAGTGCTGTCTGTTCAAAGTCTGCCCTTTCTAAACATGAGCAGGCCATCACTGAACCTTCAGGGACTTTGGGCTGAGGAGTTCATTTAGGACCGAGTTGGCATTGTTCAGTCTTTTGCAAGAGGCTTTCCAATAACACAGAAGTGCTTGCTATGACTCTTCAATATTATAACATATCACCATTGGAAGGTACAATCAAAGGCATGTCAAAGCAGCCATTCAGTGTTGACCATCAAGAAGGATGAAAGCATAATTTCTATTATGCTGTTTTGTCTGGTTGGCCAGTTCATCAATAAGTATTTATTATTTCAGAAAACTACCACTCCAGGTAGGATAGCCTCTATCTTCCTGCCAAAGACAGATAGTAAATATGGCTGAGATGTTAAAGAAAAGATTGATGTTTTAAAAGGATAATATTTGTAAAATCCTTATTCCAAACCAAATGCCACTTGCTAAAAATACTCATTTAGTTTATTTATGGCGAAACATAATGAAACGTGGGCTGAAATTCCCATGAGAGTTGGAAGGTTGCAGCGAGAAACCTGTGACACACTGTGGACTCAAGGTTTCAATTCATTCTGTAGAGACATCGTGGCCCACATCCATGCAGACCTACATCTTCATCACCACACCCCTGGTATCTTTTGGTTTCACAGGGTGTCCGTTTTTGACAGACAAGAAACCAGGTGTATGCTACAGTGTCATTAATAGGAAATATCATTTCCTAAACTGAGTATAATTACCAGACAACCAAGGGACTGTGGGGCTTCAAAAGCAAGCACTAATTTTCCCTAGGATACTAATCTTTAATTTCTTAGTTGCGATTGTTCAAGTTGCCAGGAGCATTAGTTCTTATTGCAAATTGCTTGTCTTTAAAATGATTTTTTTTCCCTTTAATTTAGAACAGGTCAAAGCACCCTAAAATACCTCAAATCTGTTGGCCGCTTTATAATTACAAAGTCTAGACCAAGTTACACTATTTAAAATATAAATGAATAATACATCTGAACCGACAGCTGGTATGCCAAGTTGTAGCCCGAGGCGGCTTTAAGATGGTTGAAATGCAGTATAATGTAAATGCTTGGAAGTGAAGGACGATTAATTGAAAGCCAGACTGATAGTGAAGGGGTGGTGTTATGGATAAGATGCCACTCAGGTTAACCATATGCAACATATCATCTACAGAGGGTATTTCAAATGCTTATTGTGGACACGTTTATTTCAAGTCTGGAAATGAGCCTTCTAAACATTAACAGAAGTGTCCCACACTAATGAAAAGCCTAATAGTAGAACAGATCCTTTGTGTTATTTTTCCCTATCAAAATTCATCGAGAGGGGGCATATATTCTATTTGAATTTAACGTGACATTGGAGCCACAAGCAGGATAAAATAGACAGGATGGCTTTTGTCTATGTATAATATTAACTTAATCAAAATTGAGCTCATTTGGACTGCCTGCTTCCCCATCATCCCCCTACCCCCCACTCTGTGTTCCAACAG
Seq C2 exon
GCAGAATAAAAAAATGAAGACCGTTTACATCGTGGCTGGATTGTTTGTAATGCTGGTACAAGGCAGCTGGCAGCATGCCCCTCAAGACACGGAGGAGAACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005498:ENSRNOT00000007356:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.323
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]