RnoINT0078050 @ rn6
Intron Retention
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3330032-3336103:+
Coord C1 exon
chr3:3330032-3330073
Coord A exon
chr3:3330074-3336023
Coord C2 exon
chr3:3336024-3336103
Length
5950 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
AGCTTCCTCTCCTCCCTCAGGGT
3' ss Score
9.93
Exon sequences
Seq C1 exon
GCTTCATGTGGAAGATTTCAGCCTGGACTCTTCCCTTTCTCA
Seq A exon
GTAAGTGCTTCACATGGGGGGGGTAGGGGGACTGCCTCAGGGACAGATGTGTCCTCATGCCCTGAGAACCAGGCTCATGGGAAAGGCTACTCTTGTCCAGTACCATGGGCCACCAGCCAGACAGGAACGTGACCTGGACCAGGACCAGCATGTGTTTCTTGCCCTGGGGGCTGGAGCTGAAGATTAATGACCCCCTTGGGAGGAATCTGTGGACAGGAAAAGGGCTCCCTGGGGTGGATGTCTGGTTTTAGTTACTTTTTCTATTGCTGTGATAAAACACCATGGCCAAGGCAACTTAAAGGAGAAAAAGTTGATTGGGGCGGAGTCCACGGCCATCATGGTGGGGACATTGGAACAGGCAGGCAGGCTGGTGCTGAAGCAGTAGAAGAGAGAGCTAGCTGGGAATGACATGAACTTTTGAAACCCCAAAGCCTGTGGCACACCTCCTTCAACAATTTCATCAAGGCCACCCCCCCCATCCTTCCCAAACTGTCCGTGACTGAGACCTAGCACTCAAGTCTATGAGCCTATGCATTTCCTGACGCCAAGCCCCTCCCTCTTCTTGGCAGGGTAGTCTAGGGAAACTCAAGGCCAGGTCGTATGGAGCTGGCCAGGCACTGCCATTCTCATTCAAACCATCACAGTGCCTGAAACCGGTTGTGTCCAGACCTTCAGTAGAAGCCTGGTGACAGGATGCAGCTTTGCCGCCATGCCTGTATGGGTACAGTGTTCATTTAATCCCGCAGCCTATAGCCTCAGCTCCTGTCTGCTTCCTTTGTGCATTGGTGTCTCCCAGGGCCAAGGGTTCTGCTGGGTGCCTCTCTTTCTTCAGCTAAGAGTTAGGCCAAGTGACAAAGGCTTTGAGACTGGGGCAGCCAGAGCCCCTCAAGGAAACCTTTAGGCATGCCCCTGGGAGCCCGATCCACCACTGTTGGAGTGGTCTCCATGTGGGGCCTTGTCTGTCATTTCCATTGATGAACAGAATTGGTAACCACCACTTGCTCAGTGTCTCCAGCTGCTGGCAATTTTGGGTGCATCCCTGCTACAGTGATTCAACCTACAGTGACCCCACCGCTGTGGGCTGGGTAGCTGCAGCCACAGCCGTTAGCTCCACCTCCTTATGGTGCAGTAGAAAAGAGACATGGACAGATGCGCCAACCACATGCAGTGCTCTCCTTCTCCCCAGGTACCTGAGGAGCTGGGCCTCAGACCTGTTAACAATAGGGAGCTAGAGCCTGTCTGTGGCTGCCCCTGCTATACGCTCTTTGGAGAGCCCCCGGGGTCCAAAGAAAAACTGTCTCACTAGGCAAGTTAGTTCGAGAAGCCAGTGCTCTTTTCCCAGGCCACTCGGATCTCTTCCCTTAGGTTCCCAGGTGGAGCTTAAAGACCTCCATACCTGACAGCTTACTCTCAGGCTGCATGGGGCTAAAGCCTGGGGCCTTTCTGGGGAGCCGTGAGCTGTATGCAGGACCCAGAGCTACAAATAGAGTTCTGTTGAACTCCCCTGGGGATTATGAAGGCCTGGGGTTGTGGAAGAAGCATCATGTCTCTTCCCACTTGGCCAGCCCTCTGACGATGCAGGGAGGAGCAGGTTTGAGCTGCCCCAGGCAGCCGGTTCTTGGGCTCTTCTTACCCTCTCACCCAAGTAGCCAGTCCCACAGCTGTCTGTGCCTTCTAGTTCCTCACCAAGGTGGGTCATGTATTTTACTCTAGCTCAGACTAGTGGTTGGGCCTGTGCCCTCCCCAAGGTCGGTGGGCATGGCTGGTGTATGTGTAGCCAGTCTGTGAGTTTGCAGTGTGAGGCACTGAATGATCCAGGCCTGAGGTGGCTTCCTGTGACCCCATGGGGTGCTGCTGGTCCTGGGCCCCATACCCATTCTCTTTCTGAGCTCATTCCCATGGGACATAGTAGGACACACCTCACCGTTGATAACGCGTTGCCTCTGTCAGGTACTCTGTGATACGGGGAGAGTGGGGGGAGCATCATTGTTCCCAGTGAGGAAGCTGAAGTCAGGCAAGGGCAGAACCTGGATCTCTTCAGCTTCCTGGCGGGCACTGGCTCTCCAACCATACACTCTGTGACTCCCAGAGGTCCATGCGTCCCACCTTTGGCCCATGGGGTCGAAGTCAATGCAAGTTGAAAGCCACCTCAGACCTAGATCGTATAGGTCCGGAGGTGCCTTGAGCAGAGGCTGTAAGAGTGCAGGCCATTCGCAAACTCTGCTCCTACAGGGCTGTGCCCTGTGCCTTCATGTTAGGGCAGAGCAAACATGGTGTCCTAAACACAGGTTGGAGTAAAATGGATTATTTTTAATCCCTGTTTTGTGTGGTGCTAGAGGAAGTGGGTGGCCACAGGTCATTAAAGTTTAAAAGTAAAAAGAATTCATTGATTTCTCTGGCATCGTAGAGCTCTGACTTCAAGGGAGCCAGGCAGGCCTGTGGCTCCTCCTGGAAGACATCTGTACGTGTGCACTGCACACAAAGCACATGGGGCCGTCCAAATGGGTGTCGTCTTCTAGGCAGCCCTGCTGGGAGGGTGTGTTCTACTCATGGGATGGCATCAGTCGGGGTCAGCCTGGTACGGGGAGGATACCATTAGCCAGGTCAGTTTTCCACAGCTGGGCCAAGATGCCAACAGAAGCAGGGTTGAATGTCACAGGCTGTTCTGTGAGCAGCACAGGGCCTGGTGACTCCTGGGCCTTCACAGGCTGCTGGGTTTTCTGATCTCAAGATGCTGCTAGGAAGATGACAAGAAGGACAGGAGGCATCAAGGGCCTAGGACCCTGGAGAGTGAAGGTGGAAGTGTCCCTGGGAGTAGTGGAGACCTGGGCACTCAAGAGACCTACGGACCGCGGTCAGACATATGGGAAGGAGCAGGGGACAACCAACAGGAATGTCCCATGAGAATATCTAGTGAGATGGGGCAGCGGGGTGCAGGGACAGAGGGAGGGCCAGAGTTCTGTCTTTCCCCAGATGGGGTCCCTCTGCTTAGAGTTCTAGCTTCAAGGAAAGCATACGAGTACATCTCCTGTGTATCCTGGACAGCATCTCTGGTGGGAGAGGAGAGGAAGGTGGGTCAGCCATGGATCAGTCTGCCCAAGGGAAGTGTGTGAGTCCAGACTCCTCAAACAGAGGAGCTTATGCAGCGCAGGTCAGAACCAGTGTCAGGGGTCCACATCTGGAAATCATCATCTCGTAGGCAGAGGTGTAAGGTGGTCACGGTCACCCCACATGGCAGGAGCTGGGGCACACATGAATCTGACTCTTAAGCTTCCCCTCTGCCTGTTAGGCCACCAGGATTGACTCTGGGTTCTACCCTCTCGATCTTATCTAATCCTAACCCCCATCAGCACTCCCCCACACCCCATAGTTGTACATAGTCCCTATCTGCCCCTTCGGGGTTAAACTCTCAGCACATGGCACCTTGAGGACACGTCATCATGTTCTACTGGCATGAAGTAGCAGAGGGCAGTGAATAGCCCACCCCAGCCACCGGGGGCATACCCATGGCAGGTAGAACTTGGTGCCCTGATCTGGCAGATTGTAGAAGACTACTGTGACCATCCCTATTAGGGTTGGCATGGGAGTAGAGCCAAAGATAGGTGGGGGAACCACGGTGGGTCAGAAAGGCTGTGGTCTGTGCCCTAAGGGCGATGAAGACAGACTGCCACCTCCCTTGACAAAGGTCTTGGCCACCTGCTGAGGCTGAACAGGTAGGAAGACCCTCCCTTGAGGCCTTTATTGTAGAGGAGGTGGGTGGACAGGAGAGGGATTCATAGGTTCCTTACATGCTTTTAGGACACAGGTGATCCCACGGGCCCCCTGATAATGACTTCTGTGCCCCCATCCCCATCCAGCCTGGTCACCTAACCTCTGCCGCCTTCAAAGACAAAGTCACATAGCTGACTTCAGAGTCACTTGTGTGCAGTGTCCTCTCCTGCCTCGGGCTCCTAGCACCCTGTTAAAAGCCGTGCTGCCATATAGTACGGCATAGTTTTGCACTGGCTATAGCATGGTATACCAGGGCACTGTGGGGGCATGGTGGGACAGTGGGGTGTTCTGGATAATTGGGGTGCAGAGATGTGTTGTGGCATAATGGGTGTGCTGGACAATCTGGGGCACAAAGCTTGGTGGTGTACAGTGTAGTTTGTGGGGCATCGTGGGGTCATATGCTGGGGTAGAAGGGTATATTGAGGGACAGTGAGGTGCTTGGTAAAGTGAGGTTCAGAAGGATAGTGGAAATGCTAGGGTACACCAGCTATTAGCACTGGGTCAGCCCCTACTTGCCTACAGCTTGGCTTGCTGTGAGGTCCAGGTTGGATCCAATCATGGCCCCACACCAATGGTGTCTTGTCCCAAGCAAGATGACCAGGCCCTTGAACCCTTAGGGAACTCTGTGACCCGAGACCCTCCCCAGCCCAGGGACAGAACATTAGAGCAAGGCTGCTGAGCACACCATAGTCTACACTAACCAGGCTTTAGGGTATGCTGACTGGTGTTTTTAAAATATCTTATTACATTTATTGCTTGATATGTGCTTGCTGGGTCAGACGTGTACCATACCATGCATGTGAAGATGGGTGGATAACTTGGAGTAGTCAGCTCTCTCTGCATCACGTTGGGACCTGAGGGTCAAACTCAGGTCTCTGATAGTTACTGTTTAAAACACTTTGGTGCTGTTGGAGTAGTCAGTCCTAGCCAGGCACTGACATTAAACTCTCCAACCGTCTTGACAGAACCGGTACCTGATCAGAGGAAAGCGATGTTCAGAATCCACCTGCCCTGCGTTTGGTACCCCCTTCCCCAGGAGACAGTAACATTGACTGGGAAACGGTGGAGCAGACGAGCTGATGTTTGTCTCCTTAGCCTACAGAGAGGCAGCCACTTCTCCATGCAGAGTCCTCCCAGGCAGCAAGACGAGCCTGCAGGACACACTGTCCCTCTGTCCTTCTGAGCTGCGACCCTACACTGTTCTATGGTCCCTGATGTTGTGTCCCACCTCATTCCATCCTGAGGGGTATTGCAGCCTGTTGGGGAGGATGTACCAGTAGGGACCACGTATCCAGGGAGTCCTGTGTCCGTCACGGGGAGCCATGGTTCACTCAAGGGTACATGATTGCTCCAGTTCACAGGGGGGACATGCTGCAAGCTGGCCACACCCGCTTCAGGAGTCCAGGCTCCAAACTTGGACTCCTCGAGTTCTTCCTATGTCAGCACAAATGTTTCGTCCCCTGCTTCAGAACGGATTGGGTAGGGCAGGACCGAGTCTGAAGCCGGGGAGGTGAGAACAGAGGCTCATCTTCCCTTCGCTACAGTTATTCTCAGTGAGCACGTGTGACTCTGCCTGGGTGTGGCACTGGGGCATCGGTGAGCAGTGAATAGCTCACTTGCCGTTTACACTTGGTGATCTTAGGACCTCAGAGACCGTGGGTGTGGCCGCACCTCAGAGGCTGGCCTGTGTGTGGTGCCATGGGAGGTGGATTGCCAGGTCCACAGTGTGGCGGGGGGGTGAGGGCAGCTTACAGATGGCTGCTTCCTGCTGGCCATTGTCACCATCGTCCAGATTATAATGACTACAGGCCTCAGAGCACAAACCCCAGAGGCCACCAGACATAGTGACAGTGACCTCCTGTTTGGGAGTTTTTACATTTACTAAGAAGATTTGAGCGCCCAAGGCCCAGAGCACTGTGGATGCTGTAGCCCTGAACTCCTTGGGACCCAGAGGGCTCTGGATGCTGAGCAGATGGTCCACTGGTGGCTGCAGGTGTACTCAGGGGAGATTTTGGGAGGACAAAGTAAGGACAGTGTTCCTCCCAAGTTCCTCTCTGCTCATGTGGTTTGAAAAAAACTTGGTTGGGCTTGGGGCTCTCTGGTCCTAGTTTGAAGCTCCAGCTCCTGCCTTGGGCCTGAAGCCACTGGCCCCCAGCCCCAGCTTCCTCTCCTCCCTCAG
Seq C2 exon
GGTCCAGGTGGAATTCTATGTCAATGAGAACACCTTCAAAGAACGCCTCAAGCTGTTCTTCATCAAAAACCAGAGATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283:ENSRNOT00000023542:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]