RnoINT0082257 @ rn6
Intron Retention
Gene
ENSRNOG00000043320 | LOC103691092
Description
cytochrome P450 2B9-like [Source:RGD Symbol;Acc:9160854]
Coordinates
chr1:83298423-83300946:+
Coord C1 exon
chr1:83298423-83298583
Coord A exon
chr1:83298584-83300769
Coord C2 exon
chr1:83300770-83300946
Length
2186 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TGAGCCATTCTTTCTTGTAGGTA
3' ss Score
8.55
Exon sequences
Seq C1 exon
GAGCCCCCCTGGATCCCACCTTCCTTTTCCAGTGCATCACATCCAACATCATCTGCTCCATTGTCTTTGGAGAGTGCTTTGACTACACAGATCACCAATTCCTGCACCTGCTGGATCTGATGTATCAGACGTTTTCACTCTTAAGCTCAATCTTCAGTCAG
Seq A exon
GTCAGTGCATGGGGAGAGAGGAGCATCCAGGGCAGAGTTAAGAAGCTGATTTGTGGGTGGAAGAGGGAGTGTCTTAGGGCTGGCAGAAAGGCAGAGACAAAATGGGGAGAAAGGAGGCTGAGACCTGAGGCAGGGCGGGTGTGATGGTCAGCAAGTTTGAGAGACCTGAATGTAGAAATACAGAGCCATACACTACATACAAAGTGACAAAGTGGATGATGTGAGTATAGCTAGACAGTGGAAGACTTGGTTTTCATGCAGGAGTCCCAGCTTTTTATATCCTGGGTGAAGTGGTACACAACATGGCCAATTACAGCACACGGAGGCAGAGAGATGGGAAATTCAGAGTGATCCTTGACTATCTATTAAGTTGGAGGTCAGTCTTGCTTACATGAGAAACCCTGTGCCCATAAACCAAAAACCCAGAAATTAAAACACACAAAGACAATTCAGCAAAGAAGATTGTGTGTGTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAACAAAGGAAAGGAAAATGGAGATAGAGAAGGCATGAAAAAGATTAGAGATGGATTCAGAATTTCAAAAGCATGCATGCATATAGTGTACATATATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTGCTTTGTGTATTTTTTCATCAAATTTGGAGACCTAGTATAAGAGAGGATGGTTGCTTGGAGTTAGTACAGAACATACTCAGACTCCAAGCTCATGGCTCAAATAAGATTTATTCCCCTGGAGAAACAAGTAAGAAGAAAGGCTTCAAAGGCAGAAAAGCAACAGTAGCAGCAACAGAAAGGAGATGCTTCTGTAGGAGTGGGGTTTTAAGGGGAAAGAGGGAGTCTGTCTAGGGTGAATTCTTGTCTTGACTGCACATTAACCAAATAATGAATGTTAATGGTTTGACACTGATGTTCTGTCTCAGGGATGAGTCAGTGGCCAAATGGAATGGACCTAGTGAACAGTCTTTAGAAATACAATCTAATGGTTTAGCAAGGGGAGAAGGGTCAAAGGCAAAACTTGCTGACACCATGTTTGCCATGTTGGTCATGCTCGATCCTGTCAGAGCCCTTCATTCTCACCTCTTTATTTTCTTTCTTTTTAAATTTTATTCATTTATTTTTATTTATTCACTTTACATCTCATCCTCCCACACCCACAATACTTCTTCCCTACCTCTCTTCCCTTCTGCACTGAGTGGGTAGGCCCCTCTGGGTATCTCCCCACCTTGGCATTTCATATCTCTGTGAGGTTAGACTTAACCTCTCACACTGAGAACAGAAAAGATAGCCTAGCTAGAAGAACATCCCACATACAGGCAGCAGCTTTTAGGATAGACCCCATACAAGTTGTTGGAAACACACATGAAGACCAAGCTGCACATCTGCTATCTGCAAGCATGGAGGCCTAGGTCCAGTCCATGTATGTTCTTTGTTGGGTGGTTCAGACTCTGAGAACCCCAAGGATCCAGGTTAGTTGACTCTGGTGGTCTTCCTGTGGTGTTTTTATCCCCTTTGGTCCCCACAATCTTTACTTCTGTTTTTCCATAAGAATCCCCAAGCTCCATCCACTGTTTGGCTGTGGGTATCTGTATCTGTTTGAGTCAGGTGCTGGGTGGAGTTTCTCAGAAGACAACATGCTTCTGACTGCAAGCATAAGAGAGTATCATTAGTAGTGTTAGAGACTTGCCCATGGGATGGGTCTCAAATTGGGCTGGTTATTGTTTGACCATTCCCTAGGTCTCTGCTCCATCCCCCATGCTGGAAAGGGGAAGGGGTCCCACTCTGAGGAATAGACAGGTGTGTTCTTCTTTGGAGGAAGTGTGTTGCTGGGTGTTCTTTGAGGTTTCTGAAGTCCATGCAAGGCCCAATGTTCCTTCTTGTGCTTCCTACCTGCCTATGTATTAGGTTGTTAGCTCTCAGCCCCATGTCTGCCTGTGTGCTTGTGTGCATCCTACAATGACATTAATGAACTTACCTGAAACCATAGGCAAATGCCCAATCAAAGCTCTCTTTTGTAAGAGTTGCCTTGGTCATGGTGTCTTTCATAGCATTAGAACAGTGAATACAATAGAGCATGGTCCACTTCTTGGGACCTGATGACTTCAGGTGACCTCTTGAGCCATTCTTTCTTGTAG
Seq C2 exon
GTATTTGAACTCTTCCCTGGTGTCCTGAAGTACTTTCCTGGTGCCCACAGACAAATCTCCAGAAACCTCCATGAAATCCTGGACTTCATTGGCCAGAGTGTGGAGAAGCACAGGGCCACTTTGGACCCAAATGCTCCACGAGACTTTATATATACTTACCTTCTGCACATGGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043320:ENSRNOT00000040989:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]