RnoINT0082352 @ rn6
Intron Retention
Gene
ENSRNOG00000053042 | LOC103694540
Description
zinc finger Y-chromosomal protein 2 [Source:RGD Symbol;Acc:9203794]
Coordinates
chrY:210037-214678:+
Coord C1 exon
chrY:210037-210588
Coord A exon
chrY:210589-214528
Coord C2 exon
chrY:214529-214678
Length
3940 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
ATAATACATTTCCTATTTAGTGG
3' ss Score
5.46
Exon sequences
Seq C1 exon
GAGCTGATGCAGTACACATGGATGGTGACCAGATTATTGTGGAAGTTCAAGAAACTGTTTTTTTATCTAATTCAGATGTAACTGTGCATAATTTTGTTCCTGATGATCCAGACTCAGTTATAATTCAAGATGTTATTGAAAATGTTCTTATTGAAGATGTTCACTGCTCAAATATTTTAGAGGAAACAGATATATCTGACAATGTCATTATTCCTGAGCAAGTGCTTGATTTAGATACAGCTGAAGAAGTGTCTTTAGCACAGTTTCCAATTCCAGACATTTTAGCTTCTAGTATTACATCAACCTCATTAACTATGCCTGAACATATCTTGATGAGTGAAGCTATACATGTGTCTGATGTAGGACACATTGAACAAGTGATTCATGATAGTCTAGTAGAAACAGAAGTCATTACTGATCCTCTGACAGCCGACATTTCAGAAATACTGGTAACAGATTGTGCTTCTGAAGCAGTCTTAGATTCCAGTGGAATGCCTCTGGAGCAGCAAGATGATACCAAAGTCAACCGTGACGATTATCTTATGATTTCTT
Seq A exon
GTAAGTCCTGAGCCACATGGCTATCAAAAGTATGTTTTGTTTTTGTTGTTTTGTTTTGTTTCAGACAGGGTCTCATGCTGAACTTGAGTGTGTGCCACAATGCCTGAATTATCAAGGCATTTTGTTTTGTTTTGTTTTGTTTTGTATGTGGATATACTTAATTGTTGCTATATGTATATTCAGGTTTACAAGCATAGTTGAATGTGGAAGTCAGAAATTAGCATAGCTTTGATCATTCTACCTTTATTTTCTGAGACCAAGATCTCTCAGTATACCTAAGGTTAGCAATTCTACTAGACTTTATTGCCACTTTTTATTGCCATTGCCAATAAACTTCAATAATTCACCTGTCTGACAGCACTCAGGATGTGAAAAAGGGGGATCATGATTTTCTGAAATCTAGCGATGGTTACATAGTAACACCCAATTTCAAAACAGTAAAAACAACTTCTTTTTTTTATTTTGACCAGTAAAATAATGTCTTTACATTTGTTCCCTGTGAACATCTTAAAATTTTATGGGTTTATTTTGTTCTGTTTTGTTTTTAATAAATTTTGTAGGTTTGGGATATTACTTTTCCATCTTCATCTTATTTCTTTTTTGTCTTCTGGCATGCAGGCATTTTTTAAAAATATAAACTATAGTATTTCATAAGTCATTTCATGCATGTAGCTGTCACTTAGAATCACTTTATTCTCATATTGTTACATATGAGGCCATTTTCATTCGTATTATTGTTTTCTGCCAAAAAAATATGGCTAATAATGTGTTGCTAATGTGGTGACAAAATACTATGACCAGAAGCAAGCAGGAAAGGAAATGATTTATTTGGCTTAGACTTCAGAACACTTTTTTAATCACTGAAAGAAATCAGGACAGGAACTCAAACACTCTGGAGGCAGAAGCTGATATAGAGGCAGTAGAGGGGTGCTGCTTGCTGGCTTTAAATATTTATCTTATATATATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAGTCCAACTCAGAACCTCTGGAAGAGCCGTCAGTGCTCTAACCACTGAGCCATCTCTCCAGCTCCTCGACTTTTCTTATAGGACCCAGGACTACCAGCTCAGGGTTGGCCTCATTCACAATGAGCTGGGCCTTCTCATGTCTGCCTACAGGTGTAACTACAATCTGATCTTGTGGAGACATTTTCTTAAAAGGTTCACGCTTTTGAGATGATTTCAGTTTGTGCTGGCATAAAACTATCCTGCATAATAGTAAAACAAAAATTTTAGTAATCAAATAGGTATATGAATCTGGTTTCTGTGTTTACAAAAATGAAGGCAGGGCATTGGGAAATTGATAAGATTTACAGGCTAATAGAATGATCACTAGGTGTTTTATTGTTGTAGATATTACAAATTTTATTTCAAAATAACATTTATGCATTTTTATTTATATGAAAATAAATAGGGCATATTGTATTTCTTTCATTAGTTAAAGTGATTCAATTATAAGCATGTGGTTATTTCATTTTAAAGTTTTTTAAAATAATAAGATAACATCTCAGCAAAGTTTCTTTTCATTGTTTCAGCAAAGTCAAAAGTAGAACTAGATATAGAGTACTTATCTAGCAAGCACAAGGCCTGGATTCTATTATCAGCACTGCAGGTTTTTTGCTCTGTTTTTAAAGAACTTTATAATTTTTTAAATTATTAGTATATATGGATAGGTGTTTTGCCTGCATAAATGTCTGTGTACTGTATACTCTGGTGCCCAAGGAGGCCAGAAGTGTGTGGTCAAATCTTCATATTTTCTTTCACATGTAAATACATATATATGTGTTGTGTGTGTATACATATATGTGTGTTATATGGTATATTATATATAAGCTATACAACATATTTTGTCTCTGTATATATGTGTATACCAAATATACCAAATATACATACATGCATACATACATACATAAATACACACACACATATAGTGTTTGAAACTGAACTACAAAGAAGAAAAAACAGTGTCTTAAATGGGAAATTAGAGAAAGAAGTTTTAAGAGGATGAGGTGATAGGTGATTTGGAAGGAGAAAAATAGCTAGGAAGAAATGGGAGCAGCAGGAGGATAGAAAAGTGAAGGTATGAAGGTTTTGGAGAGATAACTTAATGTTTAGGAATACTTGTTTTCACAGAATACATAAGTTCAGTTCTCACATGGTGACTCACAACCACCTAGTTCTGCTTAGGGGTTTCAGTACCCTCTTCTGATATCTGGCAGGTATACATCTACCTGGTGCAAATGTATTCATACCCATAAAATTAGTCTTTAAAATTTTAAAGGAGGTGGAGGTATGAAAGGAAAAGACAAAAGGTACATATGAAATGCCACATTAAACTCATTTAGTGATATTTTTAACTAAAACATAAAAAAGCAGTTAAGTGGCAAAATATCCATGTTGATAAGAGAGATAGTTTTAGAATTCACTGTAAGCAGTACTGAATGTCACTTTATATTTGCCTTTTAATGTTCACTTTTGAAATAACTACATTTATTGATATGAAATAATTCTAATTAGATAAATGAACTTTCAGAACTTTTAGTTGTTCGGAGATTTCAAAATCTTTGTCTCTGAATATAAACCACTTAAAATATGGTTTAAAATATGGCTTAAAAAGCATTTAAAACTTTTAATATACTTTTCCTTAAGTATTTTTTGTGCTGAACTTAACACATTGTCTATTGTCTTTCCATTGTTACTTTTCTAATAATCATACTTTGATTTTTTTTAAAGATGTCATTTGTTTATTTATAGAGAGTCATCTCCAGGGTAGTCTCAAACTCATTTTGTAGCAATTATTCCTCCTTTTGCCTCAACTGGCCAGTGTTGGCATTGCAGATAATAGAATTCATTAGCAAAATTAAAGCAGTGGTAAGGATGAAACCCTAGACTTTGTTCATGTTAGGCAAGCACTCTTCCAAGACACATTTCTAAACTAAAATTTTCATAGAAATACATGTGATTAAATTATATTCAAAGATAAATAATAGGTAGAGCCAAAAAAATTACTTTAAAGAGTTCTGTTGACTGACTTTTTACCATGTTGGTATTTTTATTTATAGATGAGTAAATGAGAAAATATGCTCATTTATTACTCTTCATGTTTTGGAGGTATATAACAGTTTAGATTGTTCTAAATCATTTTTTCTGTACTTATTTTTGTAAGTTAATTACACGTGGCTACATAGTATAGTGATACTACTATGTATAAGCTCCTGAATTAATTAAATTAAATTAAATTAATTAAATTCCAGTAGAGTCCTGAAAATAGGAAAACGTGTTTTGCTTCTAGTATTTTCCAGAAATCATCCAATTTTATTTGTACATTTCAGAGTATATTTCTAAGAAGAAACTTCTTTTTAAAGATAAATTTACTTTATTATTTCAGTATTTTGCCTTCTTTCAAAGTGTGTCTGTGTGTGTGTCTGTGTGTCTGTGTGTATACATAACATAGTGTGCAGTGCCCATGGAACTAGAAGAAGGCATCCCCTGGAATGAAAATAGTGGTGGTTGTGAGTGTTTCCCTATGTGGATATTGGGAATCTTGGTCCTGTGCAAGAATAGCAAGTGTTTTTAGCCAGATCTCTAGACCCAGGTAAAAAGGAATTTTCTTTGGAAATTTACCTAACAGTTTGTGTATAGTATGTAAGTGAGAAGAGGGGAAAGATGATAGAGGAGAATTCAACTTTTAGAAATCACTTCTCTCCTGTTATTGGTTCTAAGAAGCAAACTTAAGGTGTCAGACCCTAAAGCCATCCAGCCAGTCCCTCTTCATTTCTATTTAAAAAAAAGAAAAAGGAAGCCATATTTTATTTTTATATCTACTATAAAGATTTATAATACATTTCCTATTTAG
Seq C2 exon
TGGATGATGCTGGCAAAACAGAGAATGAAGGTTCATCTGAAGTTACCACGAATGCAGAGTCAGAAAGTGATCCTTATAAATTAAATGAAACATCTCCTGAAGTTATCAAGGTGTACATTTTTAAAGCTGACCCTGAAGAGGATGATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053042:ENSRNOT00000077708:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.784
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PU(42.9=74.6)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(15.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]