RnoINT0088192 @ rn6
Intron Retention
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141074652-141076328:-
Coord C1 exon
chr5:141076125-141076328
Coord A exon
chr5:141074661-141076124
Coord C2 exon
chr5:141074652-141074660
Length
1464 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TGCCCTCACATGCCCTCCAGTAT
3' ss Score
7
Exon sequences
Seq C1 exon
CAACTAAGGGAATCCATTGCTGAACACAAACCTCATATTGATAAGATACTAAAGATAGGTCCACAACTGAAGGAGCTAAACCCTGAAGAAGGGAAAATGGTTGAAGAAAAATACCAGAAAGCAGAAAACATGTATGCCCAAATAAAAGATGAGGTTCGCCAACGGGCCCTGGCTCTGGATGAGGCTGTGTCCCAGTCTGCTCAG
Seq A exon
GTATGTGTGACTGTTAGGACCCTCTGCTGCACACTAGCCTAAGGAAAGGCCCTGTGTTGCCGACACAGCATCTGTAGAGCAGGAAACTCTGCTTGCCTTTGTTCCCAGCACCGTGCACTGAAACTGCATGAGAGGTAAAGGCCTGGCTGAGAGATGTAAATGTTTATTGATGGTTTCTCTGAAAGCTTCATGCTATAATGACTCTTTAGCAGGGACGATATGAAGGTGAATTAATTTTGTAGATCCCAAACCAGTAATTACTCAACAAAAGTCAGGTCCCAGCTGGGCCTGTTAGTGGTAAGCTTTAGAATGGCAGCACATTAACATGAGCAGCCAACTTTTTAAGTTCACAAAAAACTGTGTCCAAAGGGAGAAGTACACCAAAAAGGGAAATCCACCAGCGGTAGACTTTATAGCATGCGACTGCTCCCTTCTCAACTAATATATTGCTGTTAATGGCACATTCGTCATGTCTGGGTGTTTATTCCTGTGTTGAGTCAGTATTTTTGGTCAATACTTGTACTTACTCAAGTTTCCCACTCCCGTCCCATCTCACCCCATTGTGGAATGTGTTCCTTTGTGTTGTTGCCGCCTGCTCCTGTCTTCCTCACACCGCCTCATCCCATTGTTGTGTTGACTGCGCCCACCATTACAGATTGCAGAGGTAAGGTGCCCACTCACGCCCATGGGAACCTGTTTCTCTGAGAGCTGAGGACATTGCATAGAAGAAAGCTTCTCTTACCTTTTTTGGAAGTTTAGTGTGACCATCTTGTTTGGGGTGGAGTATAAATGTTAAAGAGAGATGGAAAATGATTTTGTTAAAGAAATTTCTCTTGTAGGGCACTTAACATCGATCAGTCTTGCTCAGTATTAAATCCAGAGTTGGTTTAGATGGGTTTTTTTTTTTTAAACAAAAACTCATCTGTGCTGTTCACTTTCCAATTTTATATCAAATCATAAATAAAAATGTTATGGTTTTATTCAAAGTACCAGGAAAGTGTGAAGGTTCGATTACCCTTCCCTCTTACCTTTCAGCATGGCCCTTTTCCTTTGTCCCACACTGAGTCGTCAGACTGCATACCATAGTACTTGAGCCTCCCAGCCATTCCGCATGTTAAGCTCTCATCCATGTACATAGCGGTGGAGGTCATCTAACCTTGTCCGGTCTGCTGCATGCACTCTCTCATCTGAGATGCTAAGTACTCAACTCTGACCAGTCTCACAGGCTTGTCCCTTTCTGACTTGGAGAAGTATTGTGACAATACTAACCATTTTTGTTTTATTTTTGGTATATTACTTAGCATTTTTTGAGTCACAAAATAAATACTGCCATTTCCCCTCTCTGGGCCAGCTCTAGTATACTGTATCTATTTTTTTTTTTTTTTTTTTTTTGCCATTGTGCTAGGCTGAACACAGGCTATCCTAAACAATAGGTTTATACTTATGCCCTCACATGCCCTCCAG
Seq C2 exon
TATGGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047:ENSRNOT00000045400:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(56.6=88.2),PF0043516=Spectrin=PU(0.9=1.5)
A:
NA
C2:
PF0043516=Spectrin=FE(1.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]