DreINT0091853 @ danRer10
Intron Retention
Gene
ENSDARG00000028533 | macf1a
Description
microtubule-actin crosslinking factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3606]
Coordinates
chr19:35485708-35488598:-
Coord C1 exon
chr19:35488395-35488598
Coord A exon
chr19:35485934-35488394
Coord C2 exon
chr19:35485708-35485933
Length
2461 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
TCATCTCTCTATCATTTCAGTTT
3' ss Score
9.05
Exon sequences
Seq C1 exon
CTCCTGAGAGAGTCCATCGCTGAGCACAAGCCACACATCGACAAACTGCTAAAGATCGGCCCACAGCTGGCAGAACTGAGCGCCCAGGAAGGGGCAACAGTGAGGCAGCGCTATAATGAAGCAGAGAGACGTTACATGCGCATCAAAGAGGAAGTCAAAAGTCGAGCCACTGCACTGGATGAAGCAGTGTCACAGTCCGTTCAG
Seq A exon
GTATTTTCTGGAAAATGTTTGAATGCTTACTTTGGTCTGCTGCCCAGTTTGTGATTGTATGTAAATGTTGCAGCCCACAGTTTACTCATTTTATTATCATTACAATTTCTAACACACACAAGTTCTTTTAAAGGGATTGTTTACCCAGAAATTAACATTGACCCATTTACCCTCAAGTGTAGGGCCAGACAGAATCCGCTGACTTTTTTTCTGTGCTGTTTTTTGTAATGAATGCAGAATGAATTTGAGAGTATAGGAGCTTAAAATCTAATACAAAAAATTATAATAAATAACATTTATTTAAAGTTTACAGTCAAAATCCAATAAGAACCTCCCCTGTGGTATACACAACAGGTCTCTCATACAATACATCCACTAAAAGACATGTACAAGTATCTGTTTCTGCACTGTCTGGAGCCAGCGCCTAAACTTTTCACCCATCATAGTACACATGCTGCTGATGATGTGACAATAAAAGTGATGTAATTTGATTTTACATATGCATATTATTAAACAATGCTGATATAAAGCTAAACAATTATATATTTACACGCATTTTCATAAGTAAAAAAAATAGATTAGACTCAAAAATCTGTGAAAACCTGCAGATTTCTACTGTGGCAAATTGTATATGGACCTTTCATATGTTTACAGTTTTATAAGTTTCTTTGTCCGTTTTTTTCTGAACACAAACTAAGATTCTTTGAAAAAATTCTGAAATTATAACCACTGACATCTAGTGTAGGGGAAAAATACTATGGAAGTCAATGGCACCCGATTCTTACATTCGTCTTTTGTGTTCAGCATGAAAAAATGTAAACAACTTTCATTCATTCATTCATTTTTCTTCGGTTTAGTCCCTTATTGATTGAGTTCACCACAGCGGGATGAACCGCCAACTATTCGGGCATACGTTTTACGTAGCAAATGCCCTTCTAGCCGCAACCAGTACTGGGAAACACTCCACACAGAAACACCAACTGGCCCAGCTGGGGCTTGAACCAGCAAACTTCTCACTGTGAGGTGACAGTGCTAACCACTGAGCCACTGTGTCACCCTATTTACAATCATTTATGAAAATCTGCAGATGTCTCCAGTCGCAGATTCTATGTGGACCCGTTATGTGTTTCCAAACCTTTATAAGTTTATTTTTTCCTGTTGAACACAAAATGAGATGTTTTGAAGAATGTTGGGAAGTGGCAGCTATTGACATCCAATGTAGGGGAAAAGTACTATGGAAGTCATTGGCACCAGATTCCTACAATCGTCTTTTGTGTTCAAACAAGTTTGTAAATGATTAGTTTTGTTTTTTGAGTAAACTATCCCTATGCGCTTTATTAAATCAAACACGTCACCTATAATTAAGGTTGTCTTTTAAATAACATGACTGACATCATCATCTGACTGTTTATTGATTCTTCCTGCTGGTCTGTTGCATGCTATTGAATTAACACATTGTACTGTTTCTCCACTCAATCTCTTCAAACTGTCATGTGCTCCCATATCCCATCACCCATATCCCTAAACTCCCCTTATCCCTGCTTGTTGCAACTCTCCTCTTACCCTCTCCCTGTCCATCCCATGTCCGTTTGGTCCATCCGTCCACCCGTCACTCATGTTTGTGGATGTGCTGTGTGTGTGTCCATCCCTCCATCATCACTGCTCTCTGCATCACCCTCAGCTGGTAGAGGTAAGAGCACCGTATAATACACCCATTAGTGATCTAACATCTGTATTAGATTGACAGTGAGGTTTTCAAATCATTTAGATGAGAATGTGGAGTAATTTTAGAGTCAAATATTATAGGAAATAGTGTGAAAAGTTCCATTCTCTGCTAAACATTATAGGGGGATATTTACATTTTGACTCCAACTGTATATTGAACACATACTTACCTAAAAAGCAGCGGGTTATGTAAAGTAGCCACATGTGAAGGCTACATTCAGGGGTCGTTTAAAGAATTCTGTAGCACCTAGTTATTTGTTTAATATCTCAGTTTATGTAATGATTATAATAAGTACATAGTTTGCACATGTAAAACAGGACTGTGAAATAAGGTGCATCCCCAGCTGACTTATAGACAGTATCTTGTTAGTAATAAACATGTATAAGATAAGCTCAGTCAGGAACATGCTGCCTTCATGTATGACACAAGCAACGTAAAAGTTCCAATATGTATTGAGTATTTTTAAGGCTAATATACTCTCCAAACCTGTATATGTCTGTTCAATATACAGCAATACTGTGAAACACTGTTACAATGTAGAATAACCTGTTGTCATTTATCATCATGAAGGTGTCATTATTCTAATGCGTTTTCTGTATTAATAGTAGTAGTAAGTATTCCTTCTATAACACCATCTTCTACCCTTTAGCATGTGTCTGAGATACATCTCTCCTGCACCACTTACTTTAGTGTGCTGTATGTGCTCTGACCATCGTCATCTCTCTATCATTTCAG
Seq C2 exon
TTTCATGATAAGATGGACCCTCTGTTGGAGACTCTGGAAGGCGCAGTCCAGCGCTTGCGGCAGCCTCCTCCAGTGGCCGCTGAGGTGGAGAAGATCCGGGAACAGCTGGCGGAGCACCGGGCCACAGGTCTAGAGCTGGACAAACTCCTGCCATCGTTCAGCGCTCTATGTGCCCGAGGGGAAGAGCTCATCAGTCGCGCTCCACATGATGATCCTGCCGCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028533:ENSDART00000146394:68
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=NA C2=0.327
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(57.1=88.2),PF060097=Laminin_II=PU(55.6=80.9),PF0043516=Spectrin=PU(3.7=5.9)
A:
NA
C2:
PF060097=Laminin_II=PD(42.4=55.3),PF0043516=Spectrin=FE(68.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]