GgaINT0137890 @ galGal3
Intron Retention
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5700879-5702162:+
Coord C1 exon
chr23:5700879-5700887
Coord A exon
chr23:5700888-5701930
Coord C2 exon
chr23:5701931-5702162
Length
1043 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
ATGGATTTGCTCCTCTCCAGTTC
3' ss Score
6.12
Exon sequences
Seq C1 exon
ATTACGGAG
Seq A exon
GTAAGCGCCGCTGGGATCGATGTTCATTTACACTCCTTGGGCTGAAGCGATTCTGTTTTACACTCAGACTTTCCTTTCTGGTTCACGCATAGCGCAGCTGACCTTGCTTAAGAATTAATTCTGAAAGGGGAAAAAAAGTCCTGTTTCTGGGATGGCTTTGGTTGCGCTGCCACCTGGTTTCAGCTGCGGGCAGCTTCTGCTGGGAATGCTTTGTGCAAGCCAGAGGTTTTGCTTTTGGAGCAGGTGACACCGGTGCACAGAGCTTCCTGCTCCAGCTGAGCTTCCCTTTGCTCCTGCTTGTTGGCTAAGGCAGCGTGCTGTGATCAACTTTGCACCGAGGGCCCATCTCGTCTCTGCTGGTGGCACCTTTGGCCAAGGCAGCACAGATGTTCTGCAGAGGCAGCCCTGGGGCTGGCAGTGGGGCACAGCAGAGCTGCCCGCCATCTGTCCTGCAGAGATGATTTGGGGTCTTTAAGGCCAAAGTTGACTTTACAAAAAACGAAACCGGCAGACCCTGCTAGACCCTCTTCCTTGGCTTTCTGGTGTTGCTTTTGGTGAAGCCCCAGTTCCATGGTGCTCCTCACTGTGCGCATGCAGCTCTCCACCACCTCCCTGACCGTGCCAGGGTGGTTTTCTCGCGAGCGCTGCACCGAGCGGAGGTTTCCTCCAGCACCGAACACAGCAGGCACTTCTCCGTCAGCGTCTCTGCGCAGATGCTGAAACAAGTGGGATTTGGTTTGGGTGTCACGCTGCCCATCTGCCAGGAGTGGGACAGCAGTCAAAATGTGAGCGGCACGGGGTTGAATGCCTGTGCCAGCTTCGGGAGCTTGTTTGGCTGAGGTGTGGTTTGACTTTGGGCTGGCGCAGCCCGGGGCTGTTTGCAGCAAACAGAGCCCATGCAGCACAAACAGGAGGCTGCAGGTTGGCAACGCTTGTCCTCTGCAGGAGGCCGCTGGGTGCAGCGCTGGGGGCTGTTGTGCGGGCGGGGGGATGCGGTGCTGCTGCTCCCGTCTCACTGCCCTGATGGATTTGCTCCTCTCCAG
Seq C2 exon
TTCCACGACAAGATCGAGCCGATGCTGGAGGCGCTGGAGGCCCTCTCCTCCCGCCTGCGCATGCCACCCCTCATTCCTGCCGAGGTCGATAAGATCCGGGAGTGCATCAGCGAGAACAAAAACGCCACGGTGGAGCTGGAGAAGCTGCAGCCTTCCTTCGAGGCTCTGAAGCGGCGCGGGGAGGAGCTGGTCGGCAGGTCGCAGGGCGCGGATAAGGACCTGGCAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693:ENSGALT00000005857:65
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(1.8=100)
A:
NA
C2:
PF0043516=Spectrin=FE(69.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]