HsaINT0098159 @ hg19
Intron Retention
Gene
ENSG00000127603 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:13664]
Coordinates
chr1:39902147-39903680:+
Coord C1 exon
chr1:39902147-39902153
Coord A exon
chr1:39902154-39903446
Coord C2 exon
chr1:39903447-39903680
Length
1293 bp
Sequences
Splice sites
5' ss Seq
CAGATTACA
5' ss Score
-9.43
3' ss Seq
TAATGTTCCAACATTTGTTTAGT
3' ss Score
-12.26
Exon sequences
Seq C1 exon
ATTACAG
Seq A exon
ATTACAGAGGTAAGGTACCCATCCCCATTGGGACTAGGGTGTTCTTATAATGCTGAAAATTGAGGTCATTACCTGTAAGGGAATTTCCCTTAACTTTAGTGGAATAAATTTAATTAGTGCAGTTTATTATGCCAGTTTCATTTGGGGTGGAACCTAGAAGTGAGAGAGTGATGGGAAGTGATGTTGTTAAGGAATCCCACCATGTTTTTTCTATAGGACACTTGAAATTGATAAGCCTTTCTTTAACTAAAACCAGAGTTGGTTTGAGATAGATTTTTCTTAGGAGGCATGCTTATCTGTTTTGCTCTTTTCTCTCCTCTCTGCATCAAATTTTAATGAGAACTTTTCAGTTGTAGTCATGTTATTCAAAGTAACAGAAAAGTGGGAAGGTAATAATTCTTCAAGAATAAGGTTAGATTTGGTCTTCCTTAATTACCTTTCATTATTCCAACGTTTTTTCTCTCTTATTGTTCCATAAGGTGGGTCGTTAAACTGCATGCCATGTTACTTTTAAACTACAAGTCGTGTAGCATATTAAGTTTCCCATCCATTTACACAGCTGGTGGAGGGCATCTAACTTGTTGGTCTAGTCTGTTGCATGCAACTGTCATCTCAGATGTTGACATACTGACTCTCAGCAGTTTCATAGTCTTGTCCCTTTTTTGTTACATTAGTTGGAATAGGAGAAATATTGTGGCAGCACTAAAGATTTGAATTGGTTTCTAGTATATTCATATATTTAGATTCTTAAAATAAATATTGGCTTTTTTTTTTTTTAATGGGCCAGCTCTGTATATGCCCAAAACAGTTTTGTTGTTGTTTTTTTCTTTTTCTTTTTTTTTTCTTTTAGACAAAGTCTTACTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCTATCTCAGCTCACTGCAACCTCTGCCTCTCGGGTTCAAGTGATTGTCATGCCTCAGCCTCCCTAGTAGCTGGGACTACGGGCGTGCGCCACCACACCCGGCTAATTTTTTGTATTTTTAGTAGGGACGGCGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACACACCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACCCCTGGCCCAAAACAGTTTCTTAACCAAACTCAACACTTAATAGCCATTGGGCTAAACTGAGCACAGGTTATCCTAAACAGTAGTAGGATAATATCTTGTCCTTATTCCCTAACACTTCTCCAAGAAGAGTGATGAGGTATGCTGTGATGGTAATGTTCCAACATTTGTTT
Seq C2 exon
AGTTTCATGATAAAATTGAGCCTATGTTGGAGACACTGGAGAATCTTTCCTCTCGCCTGCGTATGCCACCACTGATCCCTGCTGAAGTAGACAAGATCAGAGAGTGCATCAGTGACAATAAGAGTGCCACCGTGGAGCTAGAAAAACTGCAGCCATCCTTTGAGGCCTTGAAGCGCCGTGGAGAGGAGCTTATTGGACGATCTCAGGGAGCAGACAAGGATCTGGCTGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127603-MACF1:NM_012090:67
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.092
Domain overlap (PFAM):
C1:
NA
A:
PF060097=Laminin_II=FE(1.9=100),PF0043516=Spectrin=FE(1.8=100)
C2:
PF060097=Laminin_II=PD(42.7=56.4),PF0043516=Spectrin=FE(69.4=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)