MmuINT0094301 @ mm9
Intron Retention
Gene
ENSMUSG00000028649 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:MGI Symbol;Acc:MGI:108559]
Coordinates
chr4:123062698-123063800:-
Coord C1 exon
chr4:123063792-123063800
Coord A exon
chr4:123062930-123063791
Coord C2 exon
chr4:123062698-123062929
Length
862 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
AACGAGTCAACCTTGTTTAGTTT
3' ss Score
0.95
Exon sequences
Seq C1 exon
ATCACAGAG
Seq A exon
GTAAGGTGCCCACTCACTCCTATGGGAGCCCATTTCTCAGAGAGCTGAGAGCTGAGGGCATTGCTAGAAGAATGCTTCCCTTACCTTTTGTGGAAGTTCATTGTGTCCATCTTGTTTGGGGTGGAATATAGACGTTAAAGAGAGATGGAAATGGTTTTGTTAAAGAAATTTGTTTTTCTTGTAGGGCACTTAACATTATTGAGACTTGCTCAATATTAAATCCAGAATTGGTTTAGATGTTTTTCTTTTTCTTTTTTTTTTTTTCAAAAACTCCTCTGTGCTGTTCTCACTTTCCAATTCTATATCAAATTATAAATTAAAATTTTATAGGTTTATTCATTTTAGTACCAGGAAGGTGTGAAGGTTTGATTGGCCTTCCTTCTTACCTTTCAGCATGGCCCTTTTCTTTGTCTCACACTGTGGGTTGTTAGACAGCACACCACAAAGTTCCCATTCATGTACACAGAAGCCAAGGGCATCTAACTTTGTCAAGTCTGTCGCATGCAACTGTCATCTCAGCTGCTGAGTGCTGACTCCTACCAGTTTCATAGTCCTGTCACTTTCTTGTCAGATTAGTTGGAGTTGGAGAAGTATTGTGACAATACTAACCATTTTTGTTTGATTTTTGGTATATTACTTAGTATTTTTTGACTTACAAAATAAATACTGCCCTTTCCCCCTTCTGATGGGCTAGCTCTATTATCTAAATCTAAAACAGTTTTTTTTAGAGAAAACTAATACTGAACAGCCATTGTGCTAGGCTGAACACAGGCTATCCTAAACAGTAGGTCACCTTATGCCCTCACATGCCCTTCAATATGATGAAGTATTCTATGATGACTAACGAGTCAACCTTGTTTAG
Seq C2 exon
TTTCATGATAAAATTGAACCCATGTTGGAGACCCTGGAGAACCTGTCCTCTCGCCTGCGAATGCCTCCCCTGATTCCTGCTGAAGTCGACAAGATCAGAGAGTGCATCAGTGACAATAAAAGTGCCACCGTGGAGCTGGAGAAACTGCAGCCGTCCTTTGAAGCCCTGAAGCGGCGGGGAGAGGAACTCATTGGAAGATCGCAGGGAGCAGACAAGGATCTGGCTGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028649-Macf1:NM_009600:65
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF060097=Laminin_II=FE(1.9=100),PF0043516=Spectrin=FE(1.8=100)
A:
NA
C2:
PF060097=Laminin_II=PD(42.3=56.4),PF0043516=Spectrin=FE(69.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: