RnoEX0051762 @ rn6
Exon Skipping
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141074383-141076328:-
Coord C1 exon
chr5:141076125-141076328
Coord A exon
chr5:141075461-141075469
Coord C2 exon
chr5:141074383-141074614
Length
9 bp
Sequences
Splice sites
3' ss Seq
GACTGCGCCCACCATTACAGATT
3' ss Score
6.74
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CAACTAAGGGAATCCATTGCTGAACACAAACCTCATATTGATAAGATACTAAAGATAGGTCCACAACTGAAGGAGCTAAACCCTGAAGAAGGGAAAATGGTTGAAGAAAAATACCAGAAAGCAGAAAACATGTATGCCCAAATAAAAGATGAGGTTCGCCAACGGGCCCTGGCTCTGGATGAGGCTGTGTCCCAGTCTGCTCAG
Seq A exon
ATTGCAGAG
Seq C2 exon
TTTCATGATAAAATTGAACCCATGTTGGAGACTCTGGAGAATCTGTCCTCTCGCCTGCGAATGCCGCCCCTGATCCCTGCTGAAGTAGACAAGATCAGAGAGTGCATCAGTGACAATAAAAGTGCCACCATGGAGCTGGAAAAACTGCAGCCATCCTTTGAAGCCCTGAAGCGTCGGGGAGAGGAACTCATTGGGAGATCACAGGGAGCAGACAAGGATTTGGCTGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047-MICROEX3
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=0.000 C2=0.093
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(56.6=88.2),PF0043516=Spectrin=PU(0.9=1.5)
A:
PF0043516=Spectrin=FE(1.8=100)
C2:
PF0043516=Spectrin=FE(69.4=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATGAGGTTCGCCAACGG
R:
TCCAGAGTCTCCAACATGGGT
Band lengths:
98-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]