GgaEX0004832 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C245]
Coordinates
chr23:5382564-5384815:+
Coord C1 exon
chr23:5382564-5382767
Coord A exon
chr23:5383532-5383540
Coord C2 exon
chr23:5384584-5384815
Length
9 bp
Sequences
Splice sites
3' ss Seq
ACTGCGCCCCACCATTGCAGATT
3' ss Score
9.62
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CAACTGAGAGAGTCTATTGCTGAACATAAGCCTCATATCGACAAGCTGCTGAAAATCGGACCGCAGCTCAAGGATCTCAACCCTGAGGAGGGGGAGATGGTGCAGAAAAAGTACTCGACAGCAGAGGCCATGTATGCCAAAATCAAGGAGGAGGTGTGCCAGCGGGCTCTCGCACTCGATGAAGCCGTCTCGCAGTCCACTCAG
Seq A exon
ATTACGGAG
Seq C2 exon
TTCCACGACAAGATCGAGCCGATGCTGGAGGCGCTGGAGGCCCTCTCCTCCCGCCTGCGCATGCCACCCCTCATTCCTGCCGAGGTCGATAAGATCCGGGAGTGCATCAGCGAGAACAAAAACGCCACGGTGGAGCTGGAGAAGCTGCAGCCTTCCTTCGAGGCTCTGAAGCGGCGCGGGGAGGAGCTGGTCGGCAGGTCGCAGGGCGCGGATAAGGACCTGGCAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(56.6=88.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAGCCGTCTCGCAGTC
R:
CAGGAATGAGGGGTGGCATG
Band lengths:
106-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]