DreEX0044251 @ danRer10
Exon Skipping
Gene
ENSDARG00000028533 | macf1a
Description
microtubule-actin crosslinking factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3606]
Coordinates
chr19:35485708-35488598:-
Coord C1 exon
chr19:35488395-35488598
Coord A exon
chr19:35486705-35486713
Coord C2 exon
chr19:35485708-35485933
Length
9 bp
Sequences
Splice sites
3' ss Seq
GCTCTCTGCATCACCCTCAGCTG
3' ss Score
5.9
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CTCCTGAGAGAGTCCATCGCTGAGCACAAGCCACACATCGACAAACTGCTAAAGATCGGCCCACAGCTGGCAGAACTGAGCGCCCAGGAAGGGGCAACAGTGAGGCAGCGCTATAATGAAGCAGAGAGACGTTACATGCGCATCAAAGAGGAAGTCAAAAGTCGAGCCACTGCACTGGATGAAGCAGTGTCACAGTCCGTTCAG
Seq A exon
CTGGTAGAG
Seq C2 exon
TTTCATGATAAGATGGACCCTCTGTTGGAGACTCTGGAAGGCGCAGTCCAGCGCTTGCGGCAGCCTCCTCCAGTGGCCGCTGAGGTGGAGAAGATCCGGGAACAGCTGGCGGAGCACCGGGCCACAGGTCTAGAGCTGGACAAACTCCTGCCATCGTTCAGCGCTCTATGTGCCCGAGGGGAAGAGCTCATCAGTCGCGCTCCACATGATGATCCTGCCGCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028533-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=0.000 C2=0.327
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(57.1=88.2),PF060097=Laminin_II=PU(55.6=80.9),PF0043516=Spectrin=PU(3.7=5.9)
A:
PF0043516=Spectrin=FE(1.8=100)
C2:
PF060097=Laminin_II=PD(42.4=55.3),PF0043516=Spectrin=FE(68.8=100)
Main Inclusion Isoform:
ENSDART00000146394fB3674
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAAAAGTCGAGCCACTGC
R:
GCCTTCCAGAGTCTCCAACAG
Band lengths:
94-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]