GgaEX0004832 @ galGal3
Exon Skipping
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5699911-5702162:+
Coord C1 exon
chr23:5699911-5700118
Coord A exon
chr23:5700879-5700887
Coord C2 exon
chr23:5701931-5702162
Length
9 bp
Sequences
Splice sites
3' ss Seq
ACTGCGCCCCACCATTGCAGATT
3' ss Score
9.62
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CAACTGAGAGAGTCTATTGCTGAACATAAGCCTCATATCGACAAGCTGCTGAAAATCGGACCGCAGCTCAAGGATCTCAACCCTGAGGAGGGGGAGATGGTGCAGAAAAAGTACTCGACAGCAGAGGCCATGTATGCCAAAATCAAGGAGGAGGTGTGCCAGCGGGCTCTCGCACTCGATGAAGCCGTCTCGCAGTCCACTCAGGTAC
Seq A exon
ATTACGGAG
Seq C2 exon
TTCCACGACAAGATCGAGCCGATGCTGGAGGCGCTGGAGGCCCTCTCCTCCCGCCTGCGCATGCCACCCCTCATTCCTGCCGAGGTCGATAAGATCCGGGAGTGCATCAGCGAGAACAAAAACGCCACGGTGGAGCTGGAGAAGCTGCAGCCTTCCTTCGAGGCTCTGAAGCGGCGCGGGGAGGAGCTGGTCGGCAGGTCGCAGGGCGCGGATAAGGACCTGGCAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-MICROEX2
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(56.6=88.2),PF0043516=Spectrin=PU(0.9=1.5)
A:
PF0043516=Spectrin=FE(1.8=100)
C2:
PF0043516=Spectrin=FE(69.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGCAGTCCACTCAGGTAC
R:
CAGGAATGAGGGGTGGCATG
Band lengths:
100-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]