RnoINT0088922 @ rn6
Intron Retention
Gene
ENSRNOG00000001047 | Map2k7
Description
mitogen activated protein kinase kinase 7 [Source:RGD Symbol;Acc:1560043]
Coordinates
chr12:2549042-2549349:-
Coord C1 exon
chr12:2549269-2549349
Coord A exon
chr12:2549185-2549268
Coord C2 exon
chr12:2549042-2549184
Length
84 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
AATGCCTGTCACCCTCCCAGGTG
3' ss Score
9.05
Exon sequences
Seq C1 exon
CCTGAGCGCATTGACCCGCCAGACCCCACCAAGCCAGACTATGACATCCGGGCCGATGTGTGGAGCCTGGGCATCTCACTG
Seq A exon
GTAGGTTGGGACTGTTGTTGTAGGACTGGGTGGGAAGCCAGGGCTCTCTTACCTGCTGTTCAGCAATGCCTGTCACCCTCCCAG
Seq C2 exon
GTGGAGCTGGCAACAGGACAGTTCCCCTATAAGAACTGCAAGACGGACTTTGAGGTCCTCACCAAAGTCCTACAGGAAGAGCCCCCGCTCCTGCCTGGTCACATGGGCTTCTCAGGGGACTTCCAGTCATTTGTCAAAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001047:ENSRNOT00000061821:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.0=100)
A:
NA
C2:
PF0006920=Pkinase=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGACTATGACATCCGGG
R:
ACTGGAAGTCCCCTGAGAAGC
Band lengths:
177-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]