BtaINT0089104 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010639 | MAP2K7
Description
mitogen-activated protein kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6847]
Coordinates
chr7:17893283-17893629:+
Coord C1 exon
chr7:17893283-17893363
Coord A exon
chr7:17893364-17893486
Coord C2 exon
chr7:17893487-17893629
Length
123 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CCTGCCCGTTTCTCTCCCAGGTG
3' ss Score
12.79
Exon sequences
Seq C1 exon
CCTGAGCGCATCGACCCCCCGGATCCCACCAAGCCCGACTACGACATCCGGGCCGATGTGTGGAGCCTGGGCATCTCCTTG
Seq A exon
GTGAGTTGGGGCCCCGGCTTTTGGAGGCTGGGTTTTCTCGGGGCCCGGAGGCAGGCAGTGGCAGCAGAAAGGGCAGGGCCCTGTCCTCCCTGGCCGGCCCAGCCCTGCCCGTTTCTCTCCCAG
Seq C2 exon
GTGGAGCTGGCGACAGGACAGTTCCCCTACAAGAACTGCAAGACAGACTTTGAGGTCCTCACCAAAGTCCTCCAAGAGGAGCCCCCGCTCCTGCCCGGACACATGGGCTTCTCGGGGGACTTCCAGTCCTTCGTCAAAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010639:ENSBTAT00000014063:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.0=100)
A:
NA
C2:
PF0006920=Pkinase=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCGCATCGACCCCC
R:
CAGTCTTTGACGAAGGACTGGA
Band lengths:
223-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]