DreINT0092550 @ danRer10
Intron Retention
Gene
ENSDARG00000008279 | map2k7
Description
mitogen-activated protein kinase kinase 7 [Source:ZFIN;Acc:ZDB-GENE-090312-186]
Coordinates
chr1:45161462-45162237:+
Coord C1 exon
chr1:45161462-45161542
Coord A exon
chr1:45161543-45162094
Coord C2 exon
chr1:45162095-45162237
Length
552 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ATATTCCTCCCTGCCTGTAGGTG
3' ss Score
10.34
Exon sequences
Seq C1 exon
CCTGAGAGAATAGACCCTCCAGACCCCAGTAAGCCAGATTATGACATCAGAGCCGACGTCTGGAGTCTTGGCATTTCTCTG
Seq A exon
GTGAGTTCCTCTACCTATACACTGTTGGGTAGACACTTGTTTACTGGGATTTCTTTGCCGAAAGTTGGGTTTTGCTATTGATTATGTATACTTTTAGTTTGCTTATGTAGCATTAACATTCAAGGAGAAATTGGCAAATGCTTGGCATGCCTAATATGGTGTTTTTATTCATTTTCATGAAGCCGTGTGAACAAGGATAAGCTTTTCTGTTTGTAATTCAGCTGTAATTGATTGTCATTGTCATTTACAAATGTTAAAGTTCAAACGTTTATTTTAAAAAGAGGGTAAATAAAGATACAATGTTATATAATATAATCATTTTATTCAATATAATAATTTATTATTCAGAATGAATACAGAATTAATCCTGAACAAAAGTGATAGGTGGTTTCCAAATATTCACTTTATTGTTAGATTGATTTCTGATTGTGTGGAAAGCCTGGAGGAATAGTTCAGCTCTACATGCATTGTAATAAATTACATGAAAATGGAACAATTATGCATTGACCTGAATCACAGTTAATAATTACCTATATTCCTCCCTGCCTGTAG
Seq C2 exon
GTGGAGCTAGCCACAGGACAGTTTCCTTACAAGAACTGCAAGACAGACTTTGAGGTTCTTACCAAAGTTCTGCAAGAGGACCCGCCAGTGCTTCCTCTCAGCATGGGCTTTTCCCCTGACTTTCAGTCCTTCGTCAAAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008279:ENSDART00000148086:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.0=100)
A:
NA
C2:
PF0006920=Pkinase=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGAATAGACCCTCCAGACC
R:
CAGTCTTTGACGAAGGACTGA
Band lengths:
222-774
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]