RnoINT0090625 @ rn6
Intron Retention
Gene
ENSRNOG00000028586 | Mcph1
Description
microcephalin 1 [Source:RGD Symbol;Acc:1560642]
Coordinates
chr16:76070367-76079508:-
Coord C1 exon
chr16:76078399-76079508
Coord A exon
chr16:76070468-76078398
Coord C2 exon
chr16:76070367-76070467
Length
7931 bp
Sequences
Splice sites
5' ss Seq
GAAGTATGT
5' ss Score
6.97
3' ss Seq
CCAATCTACTTGTTTTTCAGGTG
3' ss Score
9.87
Exon sequences
Seq C1 exon
ATGAATCCTTTGCCAGTGGTTCTCACTTATCTTTTGATGGTCCCTGTGGAGATCAAGAAAGGAAACTGGGAAGATCTTCTAATGAGATGGCCAGGATGACATGTCCTTCCTCACCTGTGTTGAGGGCAAGCAGTTTTTATGGTTCAGCATCATCCAACCACCTCAGGCAGCCAAGTCCTCAGAAAGCTGCAGACACTCCTTCAAAGGAGGGTGTCAACCAGCAGAAAGAGGCTACAAGTGAGGTAACTGATTCCAAGAGAAAGCAAGCTGCAGGTGTTTCTCAGGGGATGGCTGATGAGAAGCACTGTCTGTCTCCTACCAAGTCTGTCATAGAAGAGCGTGTAGTACATTTGGAACCAAAGAGTTCTCCAGCAAAGAGAAAAAGGACAGCGGACTTGGGTTCACCTTCAAAAGGAAAACTGAAGAAGAGGTACAAGAGAAAGTCTACTCCGGCAGTACAATTATTCAAGTCCGACTGTAGCCCGCAGTCCACAACCAGACCTATCCCGGGGACTCCTGATGTTGAGGCCTCTTCGTATGAGGACTATTTTTCCCCTGACAATCTCAAGGAGAGGAATTCAGGGAGACTTCCCGAGGCTCAGCTACTAGCAAGCCCTTCTCTGTTCCGCTGCAAAGGTCTCTCAAAGTGGGAGCGAAAAAACATGCTAGAAATGTGTGATTTTACCTGCATTGGTGAAAAACACAGATCCACCAACATTAGTGACTTAATTTCAAAAAGTACGTGTAGTCTTGAGAAACCTGATAAGGAGGACGTAAATACAGCTTCTACTTGCTTGCCTTTGTTGGGGACCTCTGCTGATGACAGCCCAGGGCAGCGCAGGCACCCTGGCCCTCAGCCGAGGGAAGACACAGGTCCAGAAGGAAGCAGCCACCCTGATATCCTGTACAGCCCTGCTCACCACATCACACCCTTGAAAGGAAGTAGTACAGAAACAAGAGACCCAGGTGATGGAAAAGGCTCCCCCAAAGAAGGCACCACTCCTCCCGCATCAGCCTCTCCTGAAGGTGAAGCACACAGCTGTAATCTGAGTCTGGGAGAGGATCGCAATGTAGAAGAAAAGGAGAATGTAGCCACAGGGTATCCTGGAA
Seq A exon
GTATGTGAGCCCCATTCCCAGTACTTTCTGCTCTGTCAGTGTGTGACGCTGTGTTCATATTTTAAATCGTTTTTACATCTTTACAATCTAAAACCTTCCCCTCCCCTTTTATTTCAAGGAACATGCATTTGATATTTGCCAATGACTTCTTGAGGTGGCAGACCCTGAGCTTTCTGGTCAAATGTGTTGCCATGAATATACCTCCCCAGGCTTCCTCCTTGGGATTAAAAGAAACAGCGCTTACTTCAAATGGGTGGTCTATACCTTCCCATTGCCTCTCGCACTTAGCATGGCTGTACCAGAGACACAACTGATAGAGCAGTGTACTTCCTTTTTTTAAATTTGGGTTCATTTAGCAAGGGTTTATATGTGAGGAGTGCGGTAAGCATCTTACTAGTGACAGTTGATAGTACATTAGTCACAGTTTTTGTCAACCCTCCTGACTTCAGTCCTGAGTATCAGGCTTCAGGAACAGCATGAAGAGCATGGGCACTGGGAGCACTCCAGTACTCAGAGGACACTGGGAGATGTTCTGATTAGGAAGTGGGCCACCTTCCTCGTGCACAGGCAGAGACAGGTGTGACTCAGTCTGACTGATGGTTCTATAAACTATCATGTCATTACCACAAGACAACATGGGCTCCTAAGGCACGGAAGCACCGTGCTAGTCTAAGCCTAAGCATTTGCTTTACTTAGTAACATTAAGAAGACGCATGGGTATTTTCTATTGCCCACTATCAGCCCATGCTGGATTGGGGCCAGCCAACTCCTTGGGGATCCACTCTAGATACAACCGTAAATCCTTGGCTGAAGTGGACGTTCCATACTTTCCCCAACTGGAGCCACGAAGGCTGCTCTGAGCATTAGCTAGATAGACCCTCCAGATCCCTCTCGGTGAAATGAAAGGCTGTTCAGTGCCACTTGAACCCCACTTGGACTTACCAACTCTAAGATAGTGTGCAATGAGGCTTCTAAAGAAATTTACCAAGGTCAGTAACTGATATTTAAACAGTGGGGTATAATCATTAACTCTTCACATTTTTATTCCATAATTTTATGAACAATAAACAAAAAGTTTCCTTTATTAAAAAGAATAAACTTTCCCATCTCAATTTCTCACTTTCTGCCTGTGTTAATTCTTGAATTACTATTAAAGGCTAGTGGTAGACCTGTTATACCTCTAGTTTGCTTCTAGTTTATAAGAAGAGAGCCAGGAAGGAAACAGAATGTACCCTTAACCCCAGCAGGTTCTAATTTCCTTGAAGAAGACAAATGGTAAAGCCAGGTAGGACACAGTATCAGCTAGTGAGAGTATTCCAGAGGGTGCAGACCCGATCCTTCGACTGGGTCAACATTTTTATTGTAGATGGGAGAGAGAACAGCCAAAGGCATCTGGAAGAGTTCAGAGCAGAAACGGGGAGGTGTAGACTGGCCATGGCCAGGGCTGGGGAAGGAGAGTAGAAGTGAGAGTTAATATAGTTAATGTAGCTAATATAATTATAATACAGATAATGTAGAGACGAGGAAGAGAATACAAGAGTGTAAAAGGAGAGTCAGAGTTGGGAGACCAGCTGGGAAGGAGGAGTAAAAGCTCGCTTATAAAAAGAACAAATGGTATCGGGAAAAAGTGAAGCCTGGGAAAGGGCGATGGGCTGTGGTGCTGGTGTGGACGTGGAACTGTCTAACAGATGATGCTAAGGGAGCCTGGTGCCAGCGTGGGCTTTGATATGCAGCCCTTGGTACATGTCAGGAAACCATACGTCCCTTCTGCCAGAGGCAAGGGAAAAGACTCCTTAAGGCAGATGAAACCAGTCACAGGTTCCTGAGAAACGCTGGGTTTTATCACCTTGTAGTGCAGGTGGGGCTCATTACTGACTGTATAAACTGCCTTTTGGAGTTTGGGGGATTGAATCCTCCTTTGGACCCAACAGGGAGTAATTAGGAAAACAGTGATGCCCGAGAGTATAGGAGGTTCCACCAGGTACACAGAAGGCTCCTCTGAGGAGGCCGTACTGACTTTAGGCCAGGTGAAGAATGTGCTTGTGTCCACTGGAGGTGAGTACAAATGACCGAGCATCCTGCAGGAAGGAAGAGGCCAAGCAGCATCAAGCCATTGAGCCTCGGGGGTGGGGACAGTGACCGCAAGTGTGGCAGCAATCAGATCTCTGAGACCTTCCCTCCCCAGCGAGACAGGGAGTTCCAGTTTGTTTCATGGTACGATGAGAAGCTCTAGGGATTCTGAGCCGGAGTAACCAGATCTGATTTGTTTTCGCCGTAACCCTGGATACTCTGAAGGACAAATCGTGGCTTAATGTGTTTGCTAGAAACAATGACTATCAACACCATTCCCTTCCAGATAGCTGTGTATATAAACATGCAATTGGGAATATATTTAAAGGGATTCTCTCATATACATAGAACCGTGTTATCCTGTTACTTTAAACGGGCCATAGCAACGAAGTCAGACATCCCATTCACAGTAGATACTTGTTTCTTTTAGTAGAGGACCAGTGGCATTTTCTGTAATGGGTCAAAAGGATACAGATATAGAGAAATAGAGATAATTATAAATTACAGATAATTAGAGAAAAGACGTTTTTGCAAAACCTTTACTGATGAAACACTAAGTTGACTATAGTCTTGGAATGCATGTCTGCTCTTGAGCAGATTTCTTGGGTGGGGAGAGTCTGAGTGACCCTGTAATTTAATTGGAACTCTCATAAGTGAGTTTCCTATCACCTAACCTGATTGCAATTAATTCCTTAAGGTTATTGTGTACGGTGTTAGGCACCTCAACTCACTCTTGAGGGCGCCGTTTCACAAAGACTGGTCTTGTCCAAGTCTGATGCCAGTCTCCAAGGAAACAATTTTCAAACCTGTTGGGTCCTAAGGCGGTGTTTATGTACATGCATGAGTTGGTGGTGGGAAGATAGGCGGGAGCTCTTGGATCGTGCAGGTAGAGATCTTGTAGTTAGGGTATAGCTTTGTTCTTTCATTAGGTCTGAGAAATGTAGGAACTGTATATAGTCTGAATTCAAAAATGTCTGCACCTAAGTTGTGGGGGGATAGAGGACTTGCTTTCTGTTTTAATGTATTTATTTTGAAGCAAGATCTTTCTGTGTAGCACACTTGGCCTCCAGTTAATAAGCTTCCTGTCTCATCCTCTGCACTGCTGTGACTATGGGTATGTGGCAACACACCAAGCTTCATTTATCTTTAGATGGTGCAAGACAGGAAGTATGAAAAGCAGCTTGGTGAATATTGAGGTGACATTCTTCTGCCTCTGCTCCCACATGCAGGCAGACTCGCCCAGTAGATAAGGTCTACCAGATGTCCTGAGCACCTTGGCGTATGATGGAGCTCCTGGCTGCCTTCCACTAGTGACGCTGATGCAGGAGCTCCATGTGTCTCATTTGCATACCGGCCGCATTAGTACTTTCCATAGGATAGCCCACATCTGGCCATTGATTCAGTGCAGATTTTATCCTGTGCAGTGTGTGGTGGAATTTCACGTCAGCATTTTATACATGTGTGTTCATTTATCTGCACAGTTTGGCCACTTCCAACTATTGGATTCTTTTACAGTTACCAGCTGTTGGGGGTTGATGATGGACTACTGTCCTTCCAGCAGCTCTGGCCACCAGATCTTACTGCAGACAAATTTCAGATGCATAAACATTTGTTGCCCAGCGAAACGGGGTAAAGCTTTTCCAGTAGACAGATCTGCTGAAGGCCCAGCCCCCTTAACTTAGTGTCCTATTTGAGACAAGCCTCTATAAAAGTTAATGTGTGCTCAGACTACCTACTATCTCTATATTTCATCACAGGTCATTTAGAGTTCAAGATCTGGGCATTGTCTTCAGAGATCCAAGCTTCAGCTAATACCAGATATCCATGCCCTGCTCATGCATGGTTGGGGAGTGTAATATTCCTGCCAGGTCATTCTTGAATCCAAGAAGTTAGCCAATGGGAAGCTTTCTGGCAGTTTGACGACATCAGTTACAGCTCATTTGCTTCATCCGTACTGGCAGTTAACAAGGCATTTCAAAACGGGCTAGTGGACTGGTCTCTCAGGTGTGACAAGTGTTAGCACAGGAGTGGGTGACACCTGTGTTTTGATGAGGCTGAACATGTACAGAGTCGTTATTGAAGTATTCTAACCAAGAAACTGTCGTTTCTGCCAAATGTTTAATCCTAGAGTATTTGTCTGTGACGGGAGTGACGGGAACTGCCTGTGCTGATCTTGGGAGGCTGGGGTCACTGCCTGTGGTCACTCTGGGCTTCTCAGGATGAGGCTGTGACAGGCCTTTCACAAGACTAGGGGCTCCTGTGATACATGGAGTTACTGAACCAGTAGGATATGCTGATAACGGTTGTATGGGAAGATTGCAAGCTCAGGATCCCGTGGATCATGTGTCTGTCTGTCTCTGCTCACACTTGTACCTTTTGAGATTGAGTTTTACATCATTGTAAAAGTGTTGGCGCTGGGGTTTTTCCTCTGTGTCTTTGTTTCTTGAGACATGGTCTTACTCTGCATCGTAGCCTGACCTTGGAGCAGCCTTCCTACCCTAGCCTCTAAGGTGCTGCAATTCTACTCCTGTTCCACAGCACCCTTCCGCTAGATGCTTTTTCTTTCCCCTTTTTAATTTGTACTTGATGATTTTATGAAGAGTGGGGCAACACAGCATGGGTGCAATGAGGCTGAAGAGACTTACAGTGTGGATAGAACACTGTGCCCACCCCACCCCAAGACCCAGCCCTGACCCTAGGTGAGAGTATTTAGAAATTGGGCCTTTGGAAGAAGACTGCATTCAGATGAGGTCTCAAGGCTGGGGCCCTTATGATGGAACTGGTGTTTCATAAAGAGGATAAGAAACACCAGGAATTCTTCCAGTCCCCTTGCCCATATGAACTGGAAACAAGGCTGCTGTCTGCAAGCTGTGGTGGGGTGGGGGGGCAGGCTCACCAGAAGCCAATTATCCGAGTCCAGTTGGGATCAATATCTTCGAAGTTTCTGGAACAGGAGATAAATCCTCCTTATCAAGACCCCCAGTTAGGGCTTTCTAAGACATTCATCAGATTGTCACATGGAGCGGCAGCTTGCTGGAGGCCCACTGTGTGCAGTGGATAGGCTTCACCTAAGACCCCCCAAATAATACCTGTTAGCTGGAGGCCCACTGTGTGCAGTGGATAGGCCTCACCTAAGACACCCCAAATAATACCTGTTAGCTGGAGGCCCACTGTGTGCGGTGGATAGGCCTCACCTAAGACACCCCAAATAATACCTGTTAGCTGGAGGCCCACTGTGTGCAGTGGATAGGCTTCACCTAAGACACCCCAAATAATACCTGTTAGCTGGTTGCATCTGTCCATCCATTGACAAGTCCAGAGAAGGGACAGTGACTTAGCAATGTTGAGATAGAAGGTGTTATGAGGCCTCAAGTTGTCTGGGGTGGTGAGTGTGTGTGTGTATGCACACTGCAGCACAGATGTGACAACCTGTGAAAGACAGAACTGCAGGAGCAGACAGGATAGCCAGGGGAGGATGCTGGGAGATGGGACCAGGCTGGCCCCATGGTCAGCTCAGAGCCTGGTGACCTTAGAGGAGATGTGTGCAATCTCCCATGTGAGGTGTGGTGAGAGCTATGTATCTGCTTTATGCTGTGACTCAGGGTTTTATGTCCCCTTACAAATATTCTATCCCTAAATCACTTGTAACCTCGGATCTGAAGGATGATTAAAAACAATTTCTGTCTGTGTCCCATGAGTGTTAGGAGCCAAGAGGGGTTGGTTGGCTGGTTGGCTTGTTTTAAGATTGTTCGAAGCGTTAGGAAGTAATACAGAAATGTCGGTGTCACTTGCCAGGTGAAAGACGTTTACTACCTCTTAGAGCAGACTCATTAACCCTCTGCCTGCTTGCTGCAGCCCATCATCCTCTTAAAGCCAACTGAGGGCTTTTGTGGGTTGGCAGTTATCTGAGATTGAGAGGGACATGACGTTTAAAAGATGCCTGAAGAGGAAGGGGATTAGCATGTGGTTGGTTTGTCTCCAAAAGGATCCAGTTTAGACATTTATAGGCCAAGAATGTTGACCTTTAAATGTTTATAGGGCCCAGGATACAAATAACAGCTAGTTTGAATTCTGGAAAACACTGAACTATTATTCTGTGTTTTAGAGTTTATGATTAATTTTCTTATACCTATTTATTGTGCATTGTGTGTGTGCACATTGGGCAAGGGCACGCACATGTGCGTGTGTGTGTGTGTGTGCATGCGTGTGTGCATGCATGTGTGTGTGATCCAGTTTAGACATTTATAGGCCAAGAATGTTGACCTTTAAATGTTTATAGGGCCCAGGATACAAATAACAGCTAGTTTGAATTCTGGAAAACACTGAACTATTATTCTGTGTTTTAGAGTTTATGATTAATTTTCTTATACCTATTTATTGTGCATTGTGTGTGTGCACATTGGGCAAGGGCACGCACATGTGCGTGTGTGTGTGTGTGTGCATGCGTGTGTGCATGCATGTGTGTGTGCGTGTGTGTGTGTGGACAACTCACAGGAGTTAGTTCTTCTATCACGTAGGCTTTGGGGATCAGACTCAGGCTCCTCCACTCACTGAACCATCTTGCTGGCCCCTCTCTTTATTTAGATACAATTCCATTTTAAAGACTGGAAGTTCACAGGTGCTACTCCTCAAGCTTGGGTCATTCTCAGTTTTATCACACTGCCCCACCATCTGCAAAGTAGACTTTCTCATGGTGTGCCCATTTTGGTTTCCGGGGATATTTTTATGATTTTTGGCTTGGAGTATATTTATTTGTCTCTCTAGCATGTGCATTGGGTCACCTGCAGTGGTGGTCTCATGTCTTTGCTCATACCCGAACCAGCATTTAGGCGGGATACGCAGTTTACCTGCCATCACCTTCCTCGGCTGCTGCCCTCTGAGATCACAAGTGTGTTCATGTATGTCTCATGGTATTTTCTATCTTCATAAAGCCCAGCTAGTCTCTAAAATAAGCAGTCTCCTGGAGACTAAGAAGAGAGAGATCATGCAGGACTACAGTGGTAAGGGACAACTCCCTCTCCTTTTCTCTCTCCTCTCTTTGCCTCTCTTACACACACACACACACACACACACACACACACACACTATTTTATGCAGCTGAAATATCACAGAGCCACATGGAATGCAGTGGGATCTCTTTGCTTGTGCGTGTCTTTGTGGCAAGAAGTGGGTTTAGTGTGAAAGTCTGTGGGGAGCAGTTTTAAGTATGTGCAGATTAACACTAAAGCTTTATACTAAAGACCACTCTACAGCAACTAAGCATAGAGCTCACATAGCCGATGGCGTGCGTCTAAGAAGGGTCTTCTCCGACAGACGGGGCTTTATTAGTATTTTGTAATTTAGAATTGTCTTGAATGATACAAACATGCAGATGTGGGAAAGCGCGCTAACCAACCTTGAAGATTTTCTTGGACAGTTAAGCGAGAGGCAAGGAGTTGCCTACCTGCTGTACAGTCTTTTTTTTTTCTCCCTTTGAGCTCCTATATGTATATGGTGTCTGTACATAGTCACACGTGTTTATTGCACATGCACATGGTATCTGACCTCAGAGAATGACATTGCTCCCCATCACATGCGTAATGTTTTTATTTATTTGCCAAGTTTTAAATTTTACTTTAAAAATAAAGAACACCACCACCACAATATGGCCAGCATGGATAGTCTAGTCCTCAGACTGTGTCACAAGTGCATTATCTACTGAGTTGTCCCTCCAGCCCTCTAACCAGTTCTTAAATGTTCTAGGCGGGTATGGTGGTGATGGCAGAGTCTGCAGTATCCTGTCCCCATTTAAGCAGAAACAGAACGCTTAAGTTTTGTCCGACCCATGTTTCTAACCAACCTCCAATCTACTTGTTTTTCAG
Seq C2 exon
GTGTTAAAAATGGACTAGGGAGGCCAGATCCTTCAGACAGCTCGTACAGAGGCCTTGTCAGACCTCAAGAGAAACCGAAGAATTCTGGGAAAGAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028586:ENSRNOT00000043384:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.881 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF122583=Microcephalin=WD(100=99.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]