RnoINT0091329 @ rn6
Intron Retention
Gene
ENSRNOG00000013674 | Megf10
Description
multiple EGF-like domains 10 [Source:RGD Symbol;Acc:735084]
Coordinates
chr18:52311112-52316764:+
Coord C1 exon
chr18:52311112-52311248
Coord A exon
chr18:52311249-52316551
Coord C2 exon
chr18:52316552-52316764
Length
5303 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
3' ss Seq
CTGGTCTCTTGTTTGAATAGGTG
3' ss Score
9.22
Exon sequences
Seq C1 exon
GGCACAGTGTGTGGTCAGCCCTGCCCCGAGGGTCGCTTTGGAAAGAACTGTTCCCAAGAATGTCAGTGCCACAATGGAGGAGCGTGTGATGCTGCCACAGGCCAATGTCACTGCAGCCCAGGATACACAGGGGAACG
Seq A exon
GTAAGGATGCCTGCATGTTCTTCTGACGAGTCATAATGAGTAAGATTCTAATTATTCTAATTAGAAGGAAAGTTTGGAGAGTCTGGGGAACATACTCAACATTGTGTGTCTATAACTACTATCTAATATTTCAGAAGCATCCATAAAGTCTAAAAGTGTTTGAAAAACTCTCTCCTCATGGAGTGCCTAGAAACCAAGGGACAGATCAATAATACTGAATTGGAGGAGGAAATCAGAGAGACATTAAGGGGAAAAAAAAGACAATAGAACATCAGCTGGTCAGAACCCATGATGAACATGGACAGACACTTTACATGTTCAGAACTTTTAGATGGAATTGAGATATGACACAAGAGGAAAGGGATGAGGTGTTTAACAGATTGATTTTCAAATGCAACATGTACTTACTGTCTTATACAAAGTATAGCTTCCTTTTCATTGCCCGGAATATCCTTAAGAATGTTAGTTATTGAGGACAGAGAGATGGCTCCACGATTAAATGCATACTGCCTTTGCAGAGGACCTGAATTCAGTTCCTAGCGTCCATATCAGGGAACTCACAAGTACCAGGAACCCTGTACCTCTGATCTCTTCAGGAACTTGCACTCAAGTTCACGTACTACCACACATAGGCATATATAAACACACATTAATAAAATAATAACAACAACAATAATAATTTTAAGTAAAATAATAGTCATTGTATTTATTATATTGTGTGGAAATGATGGCATCAGTTCTGTGAGAGAACTTAGAAATCTGTGATCTGTGTGAAACAGGAGGGAACGGGTGATTTTGCTTTATTTGTGCTCCCGCAGCTCTTACATACATGGTTGGCCACTTCCTGTATTAAAGGGCAAACTGTTACCTCAGTGGCTCTCCTGGCCCCGCTCTTCAACTTTGCTCTTAATTCCTAGGAGACTGAACTTAGGTCTAGGAGACTGGACAGCTAAGTCCATGACCTGTGGCATAGACTCAGTATGGTGACCTGAGAGGAAGACAGGGAGACTGTGGAAGAACAACGAGCCCATGTCCTTGTAATGCTTGGGCATGACACTTTTCCTCCAGCTTGTGATAAGATTTAATAAACTGAGGATCTTGGAGCCGTCCCGAAGCTTATCCACACAGCTTTTGTGACCGAGTGGTGTGCAGGGACTGTGCAAACACTAGCCATCTAGGAACTTTGCACAATACACACCACTGTATTTTAGTGATGTATGTGACCTAAAAAAGCCTTTTTACCCTAGTATTTTTTCATTTCCTAATTTCTACTTTAATTGATTTTGATTAAATGGCTTTTGATTAAATACTATGCATTTCTCCACCTCTCCAGGCAGTGCCTCTATTTACTTATTAAATGCATTTTCTAAGTATTTTTGTAATTAAAAATTATCTTTAAGTTTCTAACTCGGTATTTTCTAAAGAAAGGAAGACTTGCTTTCAAATATTTGCTTCTTAGTTTAATCTTTACCAATTTGTAAGTTAATTTAAATGTTTTAAGCAAAGTGTGGAATTGTTTAGTTTTGAAATGATGGTATCCACCACTAAAGATGGTTGGTTTAATGATATTTCTAATGATTAGCTCACCTTTTAGCTTACTTATTTGAAGCTCTGAATTGCTGCTGACCGAGAGGAGGTCAGTGTGGGAATTCTTCCCTGCCCTGCTCTATTGGAGATGGCTTTGAGTAATCATATGTCTGCTGCTTCGGGTTACTCTGTTGCCCAGTGTCTCTTTTCCTTCCTTTGGTTAAGGCCTTTCGTTAGAAGTGTCCACTTAATTAAAAGCCATTGTGTTGTTTATTAATACAACCATAGAATTTCCTTTTACCGTGTTGATGTATGAATTATAGTTTAAAAGCAACACAAAAACATCACACTTACAAAGACAGTGAGCATGGGCTTAGCCAAGCTGGAACACAGGGGAAGAGAAGGGCAGCTAGTTTTCAAGTAAATTTTTGAAACTCAACGAAGGGAAAAAATGAGGTGGGGTGGGACATTTGTTCTACCCAAGCTTTTGTGGGGTGTTGGCGATGCCCGGTGGTTACTGTTTTCCATTGCTATTCTTGCCTCTGTTTTGGGCTATTAACATATGCAACCCATGGGATGGAGAAAGCACATTTGACTCTGTGACAGAACACAGGGAGTGGCTGTGGGGCAGTTTGTGGCAGGAGGTGGGGGAGGAGACTCAAGAGTGGGGATCGTTAAGTGTCCCTTCACTTGTCTAGAGATGCCAGTGTTCCTGGAGTGATTAGGAGGGACCGCTCCACAGTGGTTACCACCGCAGGCAGCTGCCAGCAAATAGACCCAGGATGTGGGGCCGCCACCCCACCACAGGGAAACAAGTGGTGCGCCCTGCAGGCTGGTAGGACTACACAGCAGATGACAAATAAAAGCCTTTGAGGTCTGTGGGAAGACTCAAAGGACAGGATGGGAAGACGACACAATCCAGTGAAGTCATCAAGAATGAAGAGAAGATGGTCTGGGACCCTCACAAAGCTCTGCTTGAAGATGCTTTCAAAGGTGCTAATGGCGCGTCACGGGATCATTCTGTTCTCTGATGATAAGACATGCCCCATGCTCAGTGAGTATTCACAGCTAAGTAAGGGGATCTGTTATAGTGATCCCCAAGACAGCCCTGCCAGACCTGCATGATTCTGAAAGCGAAGAAAAGCACAGGCAGAAGGTCAGGAAATGCAGCCCAGGATTGGAGGGATGCAGTGCTGGTCTTCAGCGCAGGAGCAGTCTGCCTCTTCGACTGTGGAAAAGATGGCTTTTTCCCAATTCCTTTGGCATTCGCCCAGGACAGCAGCTCCAGATGTTACAAAGGCAGGCTGCTGACCCTGGAGTCCAGGTCTGATGATAAATGGGAATCTTACACACTGAATCATGATTCAGCCCAGCTATACCAGTCACTCTGGGAAGTGACATGCTCCAGAGAACAGGAAGGGGCTGCTGTCCTGACTTCATCACAGTGTGATCCAAAGTAGTGACCAGAGCAATATCGGTGTGAGGATGTGCCCGATGAATCAGTGTTTGGTCAGGTTTTGTCCACTTAATGTTCATCCTTTTTCCTTACTGTAAAACACTATTAGAAATTTCTTTCTTCTTTTTTTCTTAATAGAATTGGTCTTCTTTTCCTTTTAATAGCAGTAATTTAATAGAAATAGTTTCTACATTTCTTTTCTGGTCAATTTTTATCACCCTCTGTTATTTCTCTGTTATCTTTCTTAAGAAAATGTATTGCTGATTCTCGAGATAGTCCTTCTTATTTTTCTTATACCATACCAGCTACTTTAAGGGTTTGAAAGGGAAATGGTGATCTTAAGCTAGAGAGCATCCAGAAAGTCATAGCCACTTCTTGATATCTATTTAAGTAGAAAATGTTCTGTATACACCGAATCATCACACTATACCTTATACATGTGTACAGTTTTAACAGTGATTTAAAAACCACCGGAAAAGTCTCTACTAGAAAGCTGTCCTGCTGCTTGAGTTTCCCAGGTGTACATACTTAACCATGATTGACAGGAAGGCATTGCAGTACTGATGAAGGGAACCTGTTGCCATAGCTACGGCCTAGCTGGCAAACCCAAGTGAATTTGTTCTGCATTTATGCTAGAAACTTCTAGATCGTTGATTAGAGGCTAGAAAGGTAAATACAGGCCGGGACTGGATATTATACATTTTTGCTTTCCAAGAGAAAGAAAATTCTGTGCCAAGTCACAATGAGTCCGACACATTAGTTCCCTGTGACCCAGCAACGTAACTTTCCCAGACATCAACATGTGCCTGCCGCTTCCAACACCTTTTACAGTGTGCTTAAACCACATTAAAATCATGCAGCCTTTTCTTGATTAACATGACTAACGATTATGTATTTACTGTGTGTGGGGGGGTCAGAGAACACCTTGAGGAAGTCTGTTCCCTCAATCCCGTGACTTCCGGGATCGAGTTCAGGCTATTAGGTGTCTTTTCCCACTGAATCATCCCACCAACCCCAAGTTTAACATTTTGTTTTGTTTACAAGTTTAGGGAAGAGAGTGAGGATATTTTTATCTATTTTTATTTTATATCTCGTTAGACATACTGCGAAGCTGCCAACCTTTAGTAAAAGCCTGGATCAGGTAAATCACTGTGCCTCACAAAGTCTTCCTGTAAACTGTCCCTTTTAAAAGAACAAGTCAGTTTATAAAAGCGTCTCGAAGGTTAAAAAATATTGATGGCCTTTCTAAAAATACTGTTGTCTGGAAAATAGCTCTAGACGTTCTCGGGTAGCTCTAAAGCCTTCATTTGAGGAAATCATTCAACTGTTCCAGAATTTCTCCTGTGGTTAAGCGCTTAGTGGCAGCATGCTGACAAGTGCACTTAGAGAGTTCTAGAAGCAGTGAAACCTGCTTTCGGGAGGCCCCTTTGCTTTTCTCTGTCAAATTCAGTGCATACATGAGCCAGAGTCAACCAGCAAAATGTCAGAAGATTCCCAAGCTTTTCCCTCTATACTTAGAATCCCAATATTGACGCTCACCACACCCTGTCATTAGAATTGGGCCAAGCCTGGTAGAAAGGCTGTTTCTCTTGGAATGGCATCTCTGCCATTACTCTTAAGCATGCCCTGCTGCTTGCTTGGTTCAGATCTGGAAAACACAATACTGACCTACATTTTTACAAAAAAAACAAAAACAAAAACAACAAAAACAAACAAACAAACAAAAAAAACCCGGAGTCTGGCATAAGTGGAGAGCCACATGGGAAGTGGCTGCTGAGATAGTGTCCCCTACTGTGGTGTATGCTCCACTAGGTGAGACTGTCTTTCTGTCTTCTTGGCAGAATGTTCCCAGTCACCTCACCTCTCCAGAAGGTGATTTGGCTGGCCCCTTTAACTACCCATGCTCTCCTTGGCTCCTTTTCACTCCTACAGGGACCAGCTTCCTGCCTCAACCAGCTTCCCAAAGCATCTCTCCCCTGTGAGCCCATCCTTCTCTGTTAAAAAGACTAAGGGGAAATTCAAGTTCATTGTTTCCCCTCCTTGTTATTTGGCAGGCCTTTGCAACAGAGGGCGATATTCCACTTCCCCAGAAGCTTGTTAGAAAACTCCAAGCCTTCTTATAACCTACAAACTGGGGTAGAGGGCATCTGATTTTGGAAGTTCAGAATCTCTCGAGTCTTTGTAGTCAGTTGTCTCGACCACAGAGAGATCCATCTTGCTATGTTTCTACCTATAATGGATTAAATATGGCACACTAAGCATTTCAACTTGTGCACAGTTAGGCCATTCTGAACCCACTGCTGGTCTCTTGTTTGAATAG
Seq C2 exon
GTGTCAGGATGAATGTCCTGTTGGAACCTATGGAGTTCGCTGTGCTGAGACCTGCAGGTGTGTTAATGGAGGGAAGTGTTACCATGTGAGCGGCACATGCCTATGCGAAGCAGGTTTTTCAGGTGAATTTTGCGAGGCTCGTCTGTGCCCTGAGGGGCTTTACGGCATCAAATGTGACAAGCGGTGCCCCTGCCACCTGGACAATACTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013674:ENSRNOT00000037901:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(54.3=54.3)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(43.5=27.8),PF0005319=Laminin_EGF=PU(25.0=18.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]