RnoINT0094524 @ rn6
Intron Retention
Gene
ENSRNOG00000011839 | Mrps31
Description
mitochondrial ribosomal protein S31 [Source:RGD Symbol;Acc:1307668]
Coordinates
chr16:74467851-74469248:-
Coord C1 exon
chr16:74469105-74469248
Coord A exon
chr16:74468257-74469104
Coord C2 exon
chr16:74467851-74468256
Length
848 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTTTTATTTTATTTCCCAGGTC
3' ss Score
11.33
Exon sequences
Seq C1 exon
AAGCAGCACCTTCTCTCTGGGAGATAGAATTTGCTAAGCAATTAGCCACAGTAAGCGAACAGCCGTTTGGGAATGGGTTTGAGGAGATGATACAGTGGACAAAGGAGGGGAAACTGTGGGAGTTCCCAGTTAACAATGAAGCAG
Seq A exon
GTAAGAGTTACTGCAGAAGCTCAGAGCAGTCCCCACCAGCGATTATGTGGGAAGGTGTTCTGTTTTAGAGGGGGATAGGTGCATATGTGGATCTCAGAACACTATTGGTGTCTGAGAAGAAATGTATCAAGTTATCTCAAATTGTTCTAAAGATGACAAGAGTTTGATTCAACTCTAGATATTTGAAAATAACAGTAAAAGAGTAAAATTATGTGTGAAAATGTACCGTCAGGCTCTGGGATGTAGTTCAGTCAGGCTGGACCCCCAGGACCTCATAACTGGGCCTGGTCCCTCCATGGGAGATGGGAGAGTCAGAGTCTGTAGCTGTCCACGGCTGCAGGGCTCACAGACAGAAGGTTGAGGGCAACCTTGGATGTCCGTCCTCACCTTTCACCGTGTTTTCAGACAGTTTCTGCTGGTCTACTGCTGGGTGTCAGTGTACTCCCCGAGGATTCCAGCAGTCCTGTCTTGCCTCCCATCTCTGTGGGGGCTGCACTGGAATTATAGAGCTTTGCTCTGCTGGGTCTTCATCCCAAGGATCACTGAGGTCATCAGACGTGCGCAGCAAGCCGTCTCCCCAGCTTTTTATATCCACACTCACATTCTTTTTGGTTGTTGTTGTTAAACTGCTGGCTAAACTAGGTCTCATTCCGAATTTTATTCTTCTGTGTGATGCCTTATTAACTTTACGATGTAGGCTTTATGTTCACAACTGTGTTACTTTTTTTTTTTTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGTGCTCTACCGCTGAGCTAAATCCCCAACCCCTGTGTTACTTTTTTATTTTATTTCCCAG
Seq C2 exon
GTCTTGACGATGATGGCTCAGAGTTCCATGAGCATATATTTTTGGAGAAGCACCTGGAGGATTTCCCCAAGCAAGGACCAATTCGCCTGTTCATGGAGCTGGTGACCTGTGGCCTCTCGAAAAACCCATATCTGAGCGTTAGACAGAAGGTCGAGCATATAGAGTGGTTCAGAAATTATTTTAATGAAAAAAGAGATATTCTCAAAGAAAATAACATTCACTTAACATCATGAGGAAAAATTTTTATTTAAACTGTTGAAAATGTATATTATAGCTAAGTAAAAATTTTATCAAAATTCTCCTGTGTTGATTACTGTACCTGATGTGATGCAGATAACTGTGAAATTACTTTTAACTTGAAATACATTCATATTATCTATCTGAGAACTAGTGATACATCTAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011839:ENSRNOT00000015790:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154331=MRP-S31=FE(16.2=100)
A:
NA
C2:
PF154331=MRP-S31=PD(23.6=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAAACTGTGGGAGTTCC
R:
GGTACAGTAATCAACACAGGAGA
Band lengths:
358-1206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]