RnoINT0095409 @ rn6
Intron Retention
Gene
ENSRNOG00000011420 | Mtmr7
Description
myotubularin related protein 7 [Source:RGD Symbol;Acc:1306608]
Coordinates
chr16:54851367-54853160:+
Coord C1 exon
chr16:54851367-54851507
Coord A exon
chr16:54851508-54852833
Coord C2 exon
chr16:54852834-54853160
Length
1326 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGC
5' ss Score
5.66
3' ss Seq
CATATTATGAATGTTCTTAGTAT
3' ss Score
2.83
Exon sequences
Seq C1 exon
GATTCAAGAAAGAACTTACTCTTTGTGGTCGAACCTGTGGAAGAATCGGGCTGACTACCTCAATCCTCTGTTTAGAGCTGACCACAGTCAGACCCAGGGGAGCCTTCATCTGCCTACAGCTCCATACAACTTCACATATAA
Seq A exon
GTAAGCCTTTAGAAACTTGCCAGATGTGGTTTGCAGCTAACTGGTAATGACTTAACATTCAGAGGTGTATGAAGTAAAAGCTCCGAGGTAACTGGTAATGACTTAACATTCAGAGGTGTATGAAGTAAAAGCTTCGAGGCTTTGCTGGACATAAACCCGTCAGAGAAGATGCGTGGCTGTCAATGGTGGCGTGCCGTTTCTCTTTGCACTGCTCTACATGTGAGATTCCCTTCAGAAATCGATGCGTTAGAATAAGGCCTTTAACAATACAAGTTCCCATCATGGTAACTGTTTGAAGTGCAAGCAAGGAAGTTAAAGAGGAGAGAAAAGTCCTGTAGAAGTAGAATTTGAAACATAAGTCTGGAGGAAATACCTGCCTGTGGAAACCATGGATTTGTAAGATTAGGTACTGGGGTAGGGGGAGCAACCTGGCCTTCACAGGTTCTAAGAAGATTATACTACATGCCTACTGCATGCTTTCCAGTAAAGATATACTACATGCCTACTGCATGCTTTCCAGTGAAGATATACTACATGCCTACTGCATGCTTTCCAGTGAAGGTATACTACATGCCTACTGCATGCTTTCCAGTGAAGGTATACTACATGCCTACTGCATGCTTTCCAGTGAAGATATACTACATGCCTACTGCATGCTTTCCAGTGAAGGTATACTACATGCCTACTGCATGCTTTCCAGTGAAGGTATACTACATGCCTACTGCATGCTTTCCAGTGAAGGTATACTAAATGCCTACTGCATGCTTCCCATGGCACTCACTTCTGTCTTGTATCAAGGTCTGACACACCGCCTGTTCCATTCCTTAAGATGGTTTCAGTCCTGGTTACCTCAGTATTATCTGACAGCACAGCAGAATATTAATTCTATATGAAAATGCCTGCATAGCTTGTGCAGAATAGCACTTTTTAAGACTGATGGACATGTGCTGCAGTTATTTGTATCCCAGCTAATTCATTAATAGCCCATAACTAGTGGTTATAACTACATCACTGCAGCTCAGGCACTGTTCTCTGTGCTGCAGATAAGATACCTTGTCTCCGAGGCATTTTTTAATAGGCCTAACGATACCCCCAGCATGAGATTTGTCCCATTTGCATTCCATAGTGCTTTACTGTCTAGAATAGACTTAGTGAAAATGTAAATGTCAGTTTCTGTGGTTGCAATAAGGTCAAAGCTATTGTAAGTTTAAAGGCCAGATTTTCTTTGCAGCAATAATTCTAACTATAATCATAAGATCCTCAAGTCCACTGATAAAGTTTGCTTCTTCAGTCTATTATAGAAAAACATATTATGAATGTTCTTAG
Seq C2 exon
TATTAATATAAAATTACTCTTCCTAAGAGATGTTAACTACTCTAGAAGATACCAACCTGAAATTATTACTTTTAGTGGTTGCTTTTTCAACCTTGTAACTTGCTGTTGATTATTAATATAATAATATTGTTGAGCTGTGATACTGAAGACTTGGGATTGTGGGTTTTCAGACTGGGATATGTGCTATTCTTCCTTCTCAGGTTTTGGAATGGGATGTATAACCGCTTTGAAAAGGGGCTGCAGCCTCGACAGTCTGTTACAGATTACCTCATGGCTGTGAAGGAGGAGTCCCAGCAGCTGGAGGAAGAACTGGAGTCCCTAGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011420:ENSRNOT00000065327:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.349
Domain overlap (PFAM):
C1:
PF093326=Mcm10=PU(7.4=20.8)
A:
NA
C2:
PF093326=Mcm10=FE(30.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCATCTGCCTACAGCTC
R:
CAGTTCTTCCTCCAGCTGCTG
Band lengths:
352-1678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]