DreINT0098756 @ danRer10
Intron Retention
Gene
ENSDARG00000070412 | mtmr7b
Description
myotubularin related protein 7b [Source:ZFIN;Acc:ZDB-GENE-050913-66]
Coordinates
chr1:15794698-15795884:-
Coord C1 exon
chr1:15795750-15795884
Coord A exon
chr1:15794853-15795749
Coord C2 exon
chr1:15794698-15794852
Length
897 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
AGCTGGGAACGATGTTGTAGGTT
3' ss Score
1.76
Exon sequences
Seq C1 exon
GTTACAGGAGAGAACACACTCTCTGTGGCCACATCTGTGGGAGAACAGAGCTGAATACACCAACCCTCTCTACAGGACAGACCACAGCCAGACACAGGGGGTTCTCAGACCTCTCACCACTGCCTACTGCTTCAA
Seq A exon
GTAAGTCAAGCTCTTTTTTTATTGGTCATGCTTCTGTAGGAATTAGCTAGAAGAAAATGAGAGGAAGCATGCTAAGTACCAGGAATTAGTGGAGGAGTGCAGGGAGAAAGGCTGGAGAACTTTCTATGAGCCCATAGAAGTAGGATATAGAGGCTTTGAAGGGCGTTCACTTTGCAAAGTCTTCAGTCGTTTGGGAGTTACAGGGGTGGCTAAGAAAAGGACCATTCGATCCGCAAGCAAAGCCGCAGAGAAGGCCACAAGGTGGCTGTGGATTAAGAGGGCGGATCCGTGGACTGCTACTGGGACGCAAGTTGGGACTTGATCCAACCCGGCTGGGTCACCTGGGTGAGAGTGTATGATGTTGAAAGAACCAAAACACCCAATGATCCCAGGATCTGAGGATGTGTCCCAAATGGATCCATGAGATGTTTCTTGCACAGCTAATTTATTACACCTAACATTAGTGAAGAAACTTCTACATGACATATTTGAACAGATCTGTCTTTTAGCCTCTTAATGATTTAGATATAATTAAAGGTCAAGTTTAAACCAAATAGCTTAATTAAAAGATAAAGCATACCTCGATACATCCATTCAACCTCACACTTACAATGCAGTGTCTCATATTTGCATATTTTGAATCTTTTTGCGTGTTCTTTTGGTTTTATGAATTATTTTAATGCATTAAAGTTTAAGTAAACGTCTATGAATATAAATGTTTTCTTAGAAAGCATTTAAAAGACATGTAATAGCATGTTTGACTTTATGTTTATGCTTTTTTATTATTATTTTATTATTAACCCTTTATTTGCCATCCTAAATGCATTATGGGCTTAAATTGGGTTTGATAGATATTAATGCGCAATAGAAGATAATGAGCTGGGAACGATGTTGTAG
Seq C2 exon
GTTTTGGAAGGGGATGTACGGCCGTGCAGAGAGAAGTTTGTCTTCTCAGCAGTCTCCAGCAGACTGTCTGAACGCAGTGAGGGAGGAGTCACAGCAGCTGGAGGAGGAGCTTACAGCCCACCAGGAGGTACCGCGGGAGACGGACGCTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070412:ENSDART00000169081:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.524
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCTGTGGCCACATCTGT
R:
TTGGCCAGCGTCCGTCTC
Band lengths:
272-1169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]